Class: DataGenerationFlat

The methods and processes used to generate omics data from a biosample or organism. Flattened tabular form of 'DataGeneration'. Attributes are the union of base-class slots and slots from concrete subclasses of 'DataGeneration' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/DataGenerationFlat

 classDiagram
    class DataGenerationFlat
    click DataGenerationFlat href "../DataGenerationFlat/"
      DataGenerationFlat : alternative_identifiers

      DataGenerationFlat : analyte_category

      DataGenerationFlat : associated_studies

      DataGenerationFlat : description

      DataGenerationFlat : eluent_introduction_category





        DataGenerationFlat --> "0..1" EluentIntroductionCategoryEnum : eluent_introduction_category
        click EluentIntroductionCategoryEnum href "../EluentIntroductionCategoryEnum/"



      DataGenerationFlat : end_date

      DataGenerationFlat : generates_calibration

      DataGenerationFlat : gold_sequencing_project_identifiers

      DataGenerationFlat : has_chromatography_configuration

      DataGenerationFlat : has_input

      DataGenerationFlat : has_mass_spectrometry_configuration

      DataGenerationFlat : has_output

      DataGenerationFlat : id

      DataGenerationFlat : insdc_bioproject_identifiers

      DataGenerationFlat : insdc_experiment_identifiers

      DataGenerationFlat : instrument_instance_specifier

      DataGenerationFlat : instrument_used

      DataGenerationFlat : name

      DataGenerationFlat : ncbi_project_name

      DataGenerationFlat : principal_investigator_email

      DataGenerationFlat : principal_investigator_has_raw_value

      DataGenerationFlat : principal_investigator_name

      DataGenerationFlat : principal_investigator_orcid

      DataGenerationFlat : principal_investigator_profile_image_url

      DataGenerationFlat : principal_investigator_websites

      DataGenerationFlat : processing_institution





        DataGenerationFlat --> "0..1" ProcessingInstitutionEnum : processing_institution
        click ProcessingInstitutionEnum href "../ProcessingInstitutionEnum/"



      DataGenerationFlat : protocol_link_analysis_type





        DataGenerationFlat --> "*" AnalysisTypeEnum : protocol_link_analysis_type
        click AnalysisTypeEnum href "../AnalysisTypeEnum/"



      DataGenerationFlat : protocol_link_description

      DataGenerationFlat : protocol_link_name

      DataGenerationFlat : protocol_link_protocol_for





        DataGenerationFlat --> "0..1" ProtocolForEnum : protocol_link_protocol_for
        click ProtocolForEnum href "../ProtocolForEnum/"



      DataGenerationFlat : protocol_link_url

      DataGenerationFlat : provenance_metadata_add_date

      DataGenerationFlat : provenance_metadata_git_url

      DataGenerationFlat : provenance_metadata_mod_date

      DataGenerationFlat : provenance_metadata_source_system_of_record





        DataGenerationFlat --> "0..1" SourceSystemEnum : provenance_metadata_source_system_of_record
        click SourceSystemEnum href "../SourceSystemEnum/"



      DataGenerationFlat : provenance_metadata_submission_portal_identifier

      DataGenerationFlat : provenance_metadata_version

      DataGenerationFlat : qc_comment

      DataGenerationFlat : qc_status





        DataGenerationFlat --> "0..1" StatusEnum : qc_status
        click StatusEnum href "../StatusEnum/"



      DataGenerationFlat : start_date

      DataGenerationFlat : type

Slots

Name	Cardinality and Range	Description	Inheritance
alternative_identifiers	* Uriorcurie	A list of alternative identifiers for the entity	direct
analyte_category	1 String	The type of analyte(s) that were measured in the data generation process	direct
associated_studies	1..* String	The study associated with a resource	direct
description	0..1 String	a human-readable description of a thing	direct
eluent_introduction_category	0..1 EluentIntroductionCategoryEnum	A high-level categorization for how the processed sample is introduced into a...	direct
end_date	0..1 String	The date on which any process or activity was ended	direct
generates_calibration	0..1 String	calibration information is generated a process Reference by identifier; origi...	direct
gold_sequencing_project_identifiers	* ExternalIdentifier	identifiers for corresponding sequencing project in GOLD	direct
has_chromatography_configuration	0..1 String	The identifier of the associated ChromatographyConfiguration, providing infor...	direct
has_input	1..* String	An input to a process	direct
has_mass_spectrometry_configuration	0..1 String	The identifier of the associated MassSpectrometryConfiguration	direct
has_output	* String	An output from a process	direct
id	1 Uriorcurie	A unique identifier for a thing	direct
insdc_bioproject_identifiers	* ExternalIdentifier	identifiers for corresponding project in INSDC Bioproject	direct
insdc_experiment_identifiers	* ExternalIdentifier	Polymorphic subclass-specific slot (from 'NucleotideSequencing')	direct
instrument_instance_specifier	0..1 String	A unique value that identifies an individual instrument instance, such as a s...	direct
instrument_used	* String	What instrument was used during DataGeneration or MaterialProcessing	direct
name	0..1 String	A human readable label for an entity	direct
ncbi_project_name	0..1 String	Polymorphic subclass-specific slot (from 'NucleotideSequencing')	direct
principal_investigator_email	0..1 String	An email address for an entity such as a person	direct
principal_investigator_has_raw_value	0..1 String	The full name of the Investigator in format FIRST LAST	direct
principal_investigator_name	0..1 String	The full name of the Investigator	direct
principal_investigator_orcid	0..1 String	The ORCID of a person	direct
principal_investigator_profile_image_url	0..1 String	A url that points to an image of a person	direct
principal_investigator_websites	* String	A list of websites that are associated with the entity	direct
processing_institution	0..1 ProcessingInstitutionEnum	The organization that processed the sample	direct
protocol_link_analysis_type	* AnalysisTypeEnum	Select all the data types associated or available for this biosample Flattene...	direct
protocol_link_description	0..1 String	a human-readable description of a thing Flattened from nested slot 'protocol_...	direct
protocol_link_name	0..1 String	A human readable label for an entity Flattened from nested slot 'protocol_lin...	direct
protocol_link_protocol_for	0..1 ProtocolForEnum	The type of planned process that the protocol describes	direct
protocol_link_url	0..1 String	Flattened from nested slot 'protocol_link	direct
provenance_metadata_add_date	0..1 Datetime	The date and time at which a record was added to the NMDC database	direct
provenance_metadata_git_url	0..1 String	The url of the software repository used to generate the NMDC metadata record ...	direct
provenance_metadata_mod_date	0..1 Datetime	The date and time at which a record was last modified in the NMDC database	direct
provenance_metadata_source_system_of_record	0..1 SourceSystemEnum	Identifies the system of origin for a record Flattened from nested slot 'prov...	direct
provenance_metadata_submission_portal_identifier	* String	The UUID of the NMDC Submission Portal entry that generated this record	direct
provenance_metadata_version	0..1 String	The version tag of the software used to generate the NMDC metadata record Fla...	direct
qc_comment	0..1 String	Slot to store additional comments about laboratory or workflow output	direct
qc_status	0..1 StatusEnum	Stores information about the result of a process (ie the process of sequencin...	direct
start_date	0..1 String	The date on which any process or activity was started	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct

Identifier and Mapping Information

Annotations

property	value
table_name	data_generation_set
source_class	DataGeneration

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/DataGenerationFlat
native	https://w3id.org/nmdc/nmdc-schema-flattened/DataGenerationFlat

LinkML Source

Direct

name: DataGenerationFlat
annotations:
  table_name:
    tag: table_name
    value: data_generation_set
  source_class:
    tag: source_class
    value: DataGeneration
description: The methods and processes used to generate omics data from a biosample
  or organism. Flattened tabular form of 'DataGeneration'. Attributes are the union
  of base-class slots and slots from concrete subclasses of 'DataGeneration' that
  may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  analyte_category:
    name: analyte_category
    description: 'The type of analyte(s) that were measured in the data generation
      process

      '
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: string
    required: true
    multivalued: false
  associated_studies:
    name: associated_studies
    description: The study associated with a resource. Reference by identifier; original
      range was class 'Study'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_associated_studies
    - DataGenerationFlat
    - data_generation_set_associated_studies
    - OrganismSampleFlat
    - organism_sample_set_associated_studies
    range: string
    required: true
    multivalued: true
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  eluent_introduction_category:
    name: eluent_introduction_category
    description: A high-level categorization for how the processed sample is introduced
      into a mass spectrometer.. Polymorphic subclass-specific slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: EluentIntroductionCategoryEnum
    required: false
    multivalued: false
  end_date:
    name: end_date
    description: The date on which any process or activity was ended
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  generates_calibration:
    name: generates_calibration
    description: calibration information is generated a process Reference by identifier;
      original range was class 'CalibrationInformation'.. Polymorphic subclass-specific
      slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  gold_sequencing_project_identifiers:
    name: gold_sequencing_project_identifiers
    description: identifiers for corresponding sequencing project in GOLD. Polymorphic
      subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: external_identifier
    required: false
    multivalued: true
  has_chromatography_configuration:
    name: has_chromatography_configuration
    description: The identifier of the associated ChromatographyConfiguration, providing
      information about how a sample was introduced into the mass spectrometer. Reference
      by identifier; original range was class 'ChromatographyConfiguration'.. Polymorphic
      subclass-specific slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  has_input:
    name: has_input
    description: An input to a process. Reference by identifier; original range was
      class 'Sample'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_input
    - DataGenerationFlat
    - data_generation_set_has_input
    - MaterialProcessingFlat
    - material_processing_set_has_input
    - StorageProcessFlat
    - storage_process_set_has_input
    - WorkflowExecutionFlat
    - workflow_execution_set_has_input
    range: string
    required: true
    multivalued: true
  has_mass_spectrometry_configuration:
    name: has_mass_spectrometry_configuration
    description: The identifier of the associated MassSpectrometryConfiguration. Reference
      by identifier; original range was class 'MassSpectrometryConfiguration'.. Polymorphic
      subclass-specific slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  has_output:
    name: has_output
    description: An output from a process. Reference by identifier; original range
      was class 'DataObject'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_output
    - DataGenerationFlat
    - data_generation_set_has_output
    - MaterialProcessingFlat
    - material_processing_set_has_output
    - StorageProcessFlat
    - storage_process_set_has_output
    - WorkflowExecutionFlat
    - workflow_execution_set_has_output
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  insdc_bioproject_identifiers:
    name: insdc_bioproject_identifiers
    description: identifiers for corresponding project in INSDC Bioproject. Polymorphic
      subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: external_identifier
    required: false
    multivalued: true
  insdc_experiment_identifiers:
    name: insdc_experiment_identifiers
    description: Polymorphic subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - DataObjectFlat
    range: external_identifier
    required: false
    multivalued: true
  instrument_instance_specifier:
    name: instrument_instance_specifier
    description: A unique value that identifies an individual instrument instance,
      such as a serial number or similar identifiers assigned by the manufacturer
      or user.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: string
    multivalued: false
  instrument_used:
    name: instrument_used
    description: What instrument was used during DataGeneration or MaterialProcessing.
      Reference by identifier; original range was class 'Instrument'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - data_generation_set_instrument_used
    - MaterialProcessingFlat
    - material_processing_set_instrument_used
    range: string
    multivalued: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  ncbi_project_name:
    name: ncbi_project_name
    description: Polymorphic subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_email:
    name: principal_investigator_email
    description: An email address for an entity such as a person. This should be the
      primary email address used. Flattened from nested slot 'principal_investigator.email'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_has_raw_value:
    name: principal_investigator_has_raw_value
    description: The full name of the Investigator in format FIRST LAST. Flattened
      from nested slot 'principal_investigator.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_name:
    name: principal_investigator_name
    description: The full name of the Investigator. It should follow the format FIRST
      [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional.
      Flattened from nested slot 'principal_investigator.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_orcid:
    name: principal_investigator_orcid
    description: The ORCID of a person. Flattened from nested slot 'principal_investigator.orcid'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_profile_image_url:
    name: principal_investigator_profile_image_url
    description: A url that points to an image of a person. Flattened from nested
      slot 'principal_investigator.profile_image_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_websites:
    name: principal_investigator_websites
    description: A list of websites that are associated with the entity. Flattened
      from nested slot 'principal_investigator.websites'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  processing_institution:
    name: processing_institution
    description: The organization that processed the sample.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProcessingInstitutionEnum
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  provenance_metadata_add_date:
    name: provenance_metadata_add_date
    description: The date and time at which a record was added to the NMDC database.
      Flattened from nested slot 'provenance_metadata.add_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_git_url:
    name: provenance_metadata_git_url
    description: The url of the software repository used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.git_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  provenance_metadata_mod_date:
    name: provenance_metadata_mod_date
    description: The date and time at which a record was last modified in the NMDC
      database. Flattened from nested slot 'provenance_metadata.mod_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_source_system_of_record:
    name: provenance_metadata_source_system_of_record
    description: Identifies the system of origin for a record Flattened from nested
      slot 'provenance_metadata.source_system_of_record'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: SourceSystemEnum
    required: false
    multivalued: false
  provenance_metadata_submission_portal_identifier:
    name: provenance_metadata_submission_portal_identifier
    description: The UUID of the NMDC Submission Portal entry that generated this
      record. Flattened from nested slot 'provenance_metadata.submission_portal_identifier'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  provenance_metadata_version:
    name: provenance_metadata_version
    description: The version tag of the software used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.version'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  qc_comment:
    name: qc_comment
    description: Slot to store additional comments about laboratory or workflow output.
      For workflow output it may describe the particular workflow stage that failed.
      (ie Failed at call-stage due to a malformed fastq file).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  qc_status:
    name: qc_status
    description: Stores information about the result of a process (ie the process
      of sequencing a library may have for qc_status of 'fail' if not enough data
      was generated)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: StatusEnum
    multivalued: false
  start_date:
    name: start_date
    description: The date on which any process or activity was started
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false

Induced

name: DataGenerationFlat
annotations:
  table_name:
    tag: table_name
    value: data_generation_set
  source_class:
    tag: source_class
    value: DataGeneration
description: The methods and processes used to generate omics data from a biosample
  or organism. Flattened tabular form of 'DataGeneration'. Attributes are the union
  of base-class slots and slots from concrete subclasses of 'DataGeneration' that
  may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  analyte_category:
    name: analyte_category
    description: 'The type of analyte(s) that were measured in the data generation
      process

      '
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: string
    required: true
    multivalued: false
  associated_studies:
    name: associated_studies
    description: The study associated with a resource. Reference by identifier; original
      range was class 'Study'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - biosample_set_associated_studies
    - DataGenerationFlat
    - data_generation_set_associated_studies
    - OrganismSampleFlat
    - organism_sample_set_associated_studies
    range: string
    required: true
    multivalued: true
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  eluent_introduction_category:
    name: eluent_introduction_category
    description: A high-level categorization for how the processed sample is introduced
      into a mass spectrometer.. Polymorphic subclass-specific slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: EluentIntroductionCategoryEnum
    required: false
    multivalued: false
  end_date:
    name: end_date
    description: The date on which any process or activity was ended
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  generates_calibration:
    name: generates_calibration
    description: calibration information is generated a process Reference by identifier;
      original range was class 'CalibrationInformation'.. Polymorphic subclass-specific
      slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  gold_sequencing_project_identifiers:
    name: gold_sequencing_project_identifiers
    description: identifiers for corresponding sequencing project in GOLD. Polymorphic
      subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: external_identifier
    required: false
    multivalued: true
  has_chromatography_configuration:
    name: has_chromatography_configuration
    description: The identifier of the associated ChromatographyConfiguration, providing
      information about how a sample was introduced into the mass spectrometer. Reference
      by identifier; original range was class 'ChromatographyConfiguration'.. Polymorphic
      subclass-specific slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  has_input:
    name: has_input
    description: An input to a process. Reference by identifier; original range was
      class 'Sample'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_input
    - DataGenerationFlat
    - data_generation_set_has_input
    - MaterialProcessingFlat
    - material_processing_set_has_input
    - StorageProcessFlat
    - storage_process_set_has_input
    - WorkflowExecutionFlat
    - workflow_execution_set_has_input
    range: string
    required: true
    multivalued: true
  has_mass_spectrometry_configuration:
    name: has_mass_spectrometry_configuration
    description: The identifier of the associated MassSpectrometryConfiguration. Reference
      by identifier; original range was class 'MassSpectrometryConfiguration'.. Polymorphic
      subclass-specific slot (from 'MassSpectrometry').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  has_output:
    name: has_output
    description: An output from a process. Reference by identifier; original range
      was class 'DataObject'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_output
    - DataGenerationFlat
    - data_generation_set_has_output
    - MaterialProcessingFlat
    - material_processing_set_has_output
    - StorageProcessFlat
    - storage_process_set_has_output
    - WorkflowExecutionFlat
    - workflow_execution_set_has_output
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  insdc_bioproject_identifiers:
    name: insdc_bioproject_identifiers
    description: identifiers for corresponding project in INSDC Bioproject. Polymorphic
      subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: external_identifier
    required: false
    multivalued: true
  insdc_experiment_identifiers:
    name: insdc_experiment_identifiers
    description: Polymorphic subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - DataObjectFlat
    range: external_identifier
    required: false
    multivalued: true
  instrument_instance_specifier:
    name: instrument_instance_specifier
    description: A unique value that identifies an individual instrument instance,
      such as a serial number or similar identifiers assigned by the manufacturer
      or user.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: string
    multivalued: false
  instrument_used:
    name: instrument_used
    description: What instrument was used during DataGeneration or MaterialProcessing.
      Reference by identifier; original range was class 'Instrument'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - data_generation_set_instrument_used
    - MaterialProcessingFlat
    - material_processing_set_instrument_used
    range: string
    multivalued: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  ncbi_project_name:
    name: ncbi_project_name
    description: Polymorphic subclass-specific slot (from 'NucleotideSequencing').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_email:
    name: principal_investigator_email
    description: An email address for an entity such as a person. This should be the
      primary email address used. Flattened from nested slot 'principal_investigator.email'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_has_raw_value:
    name: principal_investigator_has_raw_value
    description: The full name of the Investigator in format FIRST LAST. Flattened
      from nested slot 'principal_investigator.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_name:
    name: principal_investigator_name
    description: The full name of the Investigator. It should follow the format FIRST
      [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional.
      Flattened from nested slot 'principal_investigator.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_orcid:
    name: principal_investigator_orcid
    description: The ORCID of a person. Flattened from nested slot 'principal_investigator.orcid'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_profile_image_url:
    name: principal_investigator_profile_image_url
    description: A url that points to an image of a person. Flattened from nested
      slot 'principal_investigator.profile_image_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_websites:
    name: principal_investigator_websites
    description: A list of websites that are associated with the entity. Flattened
      from nested slot 'principal_investigator.websites'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: DataGenerationFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  processing_institution:
    name: processing_institution
    description: The organization that processed the sample.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProcessingInstitutionEnum
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  provenance_metadata_add_date:
    name: provenance_metadata_add_date
    description: The date and time at which a record was added to the NMDC database.
      Flattened from nested slot 'provenance_metadata.add_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_git_url:
    name: provenance_metadata_git_url
    description: The url of the software repository used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.git_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  provenance_metadata_mod_date:
    name: provenance_metadata_mod_date
    description: The date and time at which a record was last modified in the NMDC
      database. Flattened from nested slot 'provenance_metadata.mod_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_source_system_of_record:
    name: provenance_metadata_source_system_of_record
    description: Identifies the system of origin for a record Flattened from nested
      slot 'provenance_metadata.source_system_of_record'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: SourceSystemEnum
    required: false
    multivalued: false
  provenance_metadata_submission_portal_identifier:
    name: provenance_metadata_submission_portal_identifier
    description: The UUID of the NMDC Submission Portal entry that generated this
      record. Flattened from nested slot 'provenance_metadata.submission_portal_identifier'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  provenance_metadata_version:
    name: provenance_metadata_version
    description: The version tag of the software used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.version'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  qc_comment:
    name: qc_comment
    description: Slot to store additional comments about laboratory or workflow output.
      For workflow output it may describe the particular workflow stage that failed.
      (ie Failed at call-stage due to a malformed fastq file).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  qc_status:
    name: qc_status
    description: Stores information about the result of a process (ie the process
      of sequencing a library may have for qc_status of 'fail' if not enough data
      was generated)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: StatusEnum
    multivalued: false
  start_date:
    name: start_date
    description: The date on which any process or activity was started
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: DataGenerationFlat
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false