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Class: MaterialProcessingSetOrderedMobilePhases

A fluid mixture of substances that flow though a chromatographic stationary phase. Flattened tabular form of 'MobilePhaseSegment'. Attributes are the union of base-class slots and slots from concrete subclasses of 'MobilePhaseSegment' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/MaterialProcessingSetOrderedMobilePhases

 classDiagram
    class MaterialProcessingSetOrderedMobilePhases
    click MaterialProcessingSetOrderedMobilePhases href "../MaterialProcessingSetOrderedMobilePhases/"
      MaterialProcessingSetOrderedMobilePhases : duration_has_maximum_numeric_value

      MaterialProcessingSetOrderedMobilePhases : duration_has_minimum_numeric_value

      MaterialProcessingSetOrderedMobilePhases : duration_has_numeric_value

      MaterialProcessingSetOrderedMobilePhases : duration_has_raw_value

      MaterialProcessingSetOrderedMobilePhases : duration_has_unit





        MaterialProcessingSetOrderedMobilePhases --> "0..1" UnitEnum : duration_has_unit
        click UnitEnum href "../UnitEnum/"



      MaterialProcessingSetOrderedMobilePhases : mobile_phase_index

      MaterialProcessingSetOrderedMobilePhases : parent_id

      MaterialProcessingSetOrderedMobilePhases : type

      MaterialProcessingSetOrderedMobilePhases : volume_has_maximum_numeric_value

      MaterialProcessingSetOrderedMobilePhases : volume_has_minimum_numeric_value

      MaterialProcessingSetOrderedMobilePhases : volume_has_numeric_value

      MaterialProcessingSetOrderedMobilePhases : volume_has_raw_value

      MaterialProcessingSetOrderedMobilePhases : volume_has_unit





        MaterialProcessingSetOrderedMobilePhases --> "0..1" UnitEnum : volume_has_unit
        click UnitEnum href "../UnitEnum/"

Slots

Name Cardinality and Range Description Inheritance
duration_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
duration_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
duration_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'duration direct
duration_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
duration_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'duration direct
type 1
Uriorcurie		 the class_uri of the class that has been instantiated direct
volume_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
volume_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
volume_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'volume direct
volume_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
volume_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'volume direct
parent_id 0..1
String		 Identifier of the parent 'MaterialProcessing' record direct
mobile_phase_index 1
Integer		 Zero-based source list position of this mobile phase within its root record direct

Identifier and Mapping Information

Annotations

property value
table_name material_processing_set_ordered_mobile_phases
source_class MaterialProcessing

Schema Source

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/MaterialProcessingSetOrderedMobilePhases
native https://w3id.org/nmdc/nmdc-schema-flattened/MaterialProcessingSetOrderedMobilePhases

LinkML Source

Direct

name: material_processing_set_ordered_mobile_phases
annotations:
  table_name:
    tag: table_name
    value: material_processing_set_ordered_mobile_phases
  source_class:
    tag: source_class
    value: MaterialProcessing
description: A fluid mixture of substances that flow though a chromatographic stationary
  phase. Flattened tabular form of 'MobilePhaseSegment'. Attributes are the union
  of base-class slots and slots from concrete subclasses of 'MobilePhaseSegment' that
  may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  duration_has_maximum_numeric_value:
    name: duration_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'duration.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: decimal
    required: false
    multivalued: false
  duration_has_minimum_numeric_value:
    name: duration_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'duration.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: decimal
    required: false
    multivalued: false
  duration_has_numeric_value:
    name: duration_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'duration.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: decimal
    required: false
    multivalued: false
  duration_has_raw_value:
    name: duration_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'duration.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: string
    required: false
    multivalued: false
  duration_has_unit:
    name: duration_has_unit
    description: The unit of the quantity Flattened from nested slot 'duration.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: UnitEnum
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  volume_has_maximum_numeric_value:
    name: volume_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_minimum_numeric_value:
    name: volume_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_numeric_value:
    name: volume_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'volume.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_raw_value:
    name: volume_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'volume.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  volume_has_unit:
    name: volume_has_unit
    description: The unit of the quantity Flattened from nested slot 'volume.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'MaterialProcessing' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string
  mobile_phase_index:
    name: mobile_phase_index
    description: Zero-based source list position of this mobile phase within its root
      record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    range: integer
    required: true
    minimum_value: 0

Induced

name: material_processing_set_ordered_mobile_phases
annotations:
  table_name:
    tag: table_name
    value: material_processing_set_ordered_mobile_phases
  source_class:
    tag: source_class
    value: MaterialProcessing
description: A fluid mixture of substances that flow though a chromatographic stationary
  phase. Flattened tabular form of 'MobilePhaseSegment'. Attributes are the union
  of base-class slots and slots from concrete subclasses of 'MobilePhaseSegment' that
  may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  duration_has_maximum_numeric_value:
    name: duration_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'duration.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: decimal
    required: false
    multivalued: false
  duration_has_minimum_numeric_value:
    name: duration_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'duration.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: decimal
    required: false
    multivalued: false
  duration_has_numeric_value:
    name: duration_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'duration.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: decimal
    required: false
    multivalued: false
  duration_has_raw_value:
    name: duration_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'duration.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: string
    required: false
    multivalued: false
  duration_has_unit:
    name: duration_has_unit
    description: The unit of the quantity Flattened from nested slot 'duration.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    range: UnitEnum
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  volume_has_maximum_numeric_value:
    name: volume_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_minimum_numeric_value:
    name: volume_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_numeric_value:
    name: volume_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'volume.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_raw_value:
    name: volume_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'volume.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  volume_has_unit:
    name: volume_has_unit
    description: The unit of the quantity Flattened from nested slot 'volume.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'MaterialProcessing' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string
  mobile_phase_index:
    name: mobile_phase_index
    description: Zero-based source list position of this mobile phase within its root
      record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: material_processing_set_ordered_mobile_phases
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    range: integer
    required: true
    minimum_value: 0