Slot: fecal contamination method (fecal_contamination_method)

The assay or protocol used to measure the fecal contamination indicator, as a name, reference or URL.

URI: nmdc:fecal_contamination_method

Applicable Classes

Name	Description	Modifies Slot
Biosample	Biological source material which can be characterized by an experiment.	no

Properties

• Range: String

Examples

• RT-ddPCR on a QIAcuity One

See Also

• https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
• https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml

Identifier and Mapping Information

Annotations

property	value
method_for	fecal_contamination_value

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
related	NCBI_BIOSAMPLE_ATTRIBUTE:ww_endog_control_1_protocol
close	GENEPIO:0100817

LinkML Source

name: fecal_contamination_method
annotations:
  method_for:
    tag: method_for
    value: fecal_contamination_value
description: The assay or protocol used to measure the fecal contamination indicator,
  as a name, reference or URL.
title: fecal contamination method
notes:
- 'PHA4GE Wastewater Contextual Data Specification 4.4.4: close match to fecal contamination
  method (GENEPIO:0100817).'
- 'NCBI BioSample: related match to the ww_endog_control_1_protocol attribute of the
  SARS-CoV-2.wwsurv.1.0 package; the PHA4GE.wwsurv.1.0 package has no method attribute.'
examples:
- value: RT-ddPCR on a QIAcuity One
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
- https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml
close_mappings:
- GENEPIO:0100817
related_mappings:
- NCBI_BIOSAMPLE_ATTRIBUTE:ww_endog_control_1_protocol
rank: 1000
domain_of:
- Biosample
range: string