Slot: presampling weather (presampling_weather)

The weather in the period before sample collection, when it may have affected the sample, for example rain that diluted the wastewater.

URI: nmdc:presampling_weather

Applicable Classes

Name	Description	Modifies Slot
Biosample	Biological source material which can be characterized by an experiment.	no

Properties

• Range: SampWeatherEnum

Examples

• rain

Comments

• samp_weather records the weather on the sampling day itself. Both use SampWeatherEnum so the two stay comparable.

See Also

• https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
• https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
close	GENEPIO:0100780, NCBI_BIOSAMPLE_ATTRIBUTE:presamp_weather

LinkML Source

name: presampling_weather
description: The weather in the period before sample collection, when it may have
  affected the sample, for example rain that diluted the wastewater.
title: presampling weather
notes:
- 'PHA4GE Wastewater Contextual Data Specification 4.4.4: close match to presampling
  weather conditions (GENEPIO:0100780); the PHA4GE field is multivalued and restricted
  to its own picklist, this slot holds one value from the MIxS sampling day weather
  list.'
- 'NCBI BioSample: close match to the presamp_weather attribute of the PHA4GE.wwsurv.1.0
  package.'
comments:
- samp_weather records the weather on the sampling day itself. Both use SampWeatherEnum
  so the two stay comparable.
examples:
- value: rain
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
- https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml
close_mappings:
- GENEPIO:0100780
- NCBI_BIOSAMPLE_ATTRIBUTE:presamp_weather
rank: 1000
domain_of:
- Biosample
range: SampWeatherEnum