Slot: protocol_link

Applicable Classes

Name	Description	Modifies Slot
Configuration	A set of parameters that define the actions of a process and is shared among...	no
PlannedProcess	A named thing that is executed according to a plan.	no
Study	A study summarizes the overall goal of a research initiative and outlines...	yes
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated.	no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are...	no
MassSpectrometryConfiguration	A set of parameters that define and control the actions of a mass...	no
ChromatographyConfiguration	A set of parameters that define and control the actions of a chromatography process.	no
Pooling	physical combination of several instances of like material.	no
Isolation	A material processing that separates an organism from a mixed sample by...	no
Culturing	A material processing that grows an organism under controlled conditions....	no
Extraction	A material separation in which a desired component of an input material is...	no
LibraryPreparation		no
CollectingBiosamplesFromSite		no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activity.	no
MixingProcess	The combining of components, particles or layers into a more homogeneous state.	no
FiltrationProcess	The process of segregation of phases; e.g. the separation of suspended...	no
StorageProcess	A planned process with the objective to preserve and protect material...	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent...	no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component.	no
ProtocolExecution	A PlannedProces that has PlannedProcess parts. Can be used to represent the...	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis. This activity has...	no
DataEmitterProcess	A process that generates data objects as output.	no
DataGeneration	The methods and processes used to generate omics data from a biosample or organism.	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a...	no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes...	no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an...	no
MetatranscriptomeAssembly		no
MetatranscriptomeAnnotation		no
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene...	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group...	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina...	no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using...	no
MetabolomicsAnalysis		no
MetaproteomicsAnalysis		no
NomAnalysis		no

Properties

Range: Protocol

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: protocol_link
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
domain_of:
- Configuration
- PlannedProcess
- Study
range: Protocol