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Slot: qc_comment

Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).

URI: nmdc:qc_comment

Applicable Classes

Name Description Modifies Slot
PlannedProcess A named thing that is executed according to a plan. no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated. no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are... no
Pooling physical combination of several instances of like material. no
Isolation A material processing that separates an organism from a mixed sample by... no
Culturing A material processing that grows an organism under controlled conditions.... no
Extraction A material separation in which a desired component of an input material is... no
LibraryPreparation no
CollectingBiosamplesFromSite no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activity. no
MixingProcess The combining of components, particles or layers into a more homogeneous state. no
FiltrationProcess The process of segregation of phases; e.g. the separation of suspended... no
StorageProcess A planned process with the objective to preserve and protect material... no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent... no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component. no
ProtocolExecution A PlannedProces that has PlannedProcess parts. Can be used to represent the... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis. This activity has... no
DataEmitterProcess A process that generates data objects as output. no
DataGeneration The methods and processes used to generate omics data from a biosample or organism. no
WorkflowExecution Represents an instance of an execution of a particular workflow no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a... no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural... no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an... no
MetatranscriptomeAssembly no
MetatranscriptomeAnnotation no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group... no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using... no
MetabolomicsAnalysis no
MetaproteomicsAnalysis no
NomAnalysis no

Properties

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
  For workflow output it may describe the particular workflow stage that failed. (ie
  Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
domain_of:
- PlannedProcess
range: string