Slot: qc_comment
Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).
URI: nmdc:qc_comment
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
MetatranscriptomeAnnotationActivity | no | |
MagsAnalysisActivity | A workflow execution activity that uses computational binning tools to group ... | no |
PlannedProcess | no | |
ReadQcAnalysisActivity | A workflow execution activity that performs quality control on raw Illumina r... | no |
MetabolomicsAnalysisActivity | no | |
MetagenomeAssembly | A workflow execution activity that converts sequencing reads into an assemble... | no |
FiltrationProcess | The process of segregation of phases; e | no |
MetatranscriptomeActivity | A metatranscriptome activity that e | no |
MixingProcess | The combining of components, particles or layers into a more homogeneous stat... | no |
CollectingBiosamplesFromSite | no | |
SubSamplingProcess | Separating a sample aliquot from the starting material for downstream activit... | no |
ChromatographicSeparationProcess | The process of using a selective partitioning of the analyte or interferent b... | no |
Pooling | physical combination of several instances of like material | no |
MetagenomeSequencingActivity | Initial sequencing activity that precedes any analysis | no |
WorkflowExecutionActivity | Represents an instance of an execution of a particular workflow | no |
MetatranscriptomeAssembly | no | |
BiosampleProcessing | A process that takes one or more biosamples as inputs and generates one or mo... | no |
Extraction | A material separation in which a desired component of an input material is se... | no |
ReadBasedTaxonomyAnalysisActivity | A workflow execution activity that performs taxonomy classification using seq... | no |
MetaproteomicsAnalysisActivity | no | |
NomAnalysisActivity | no | |
OmicsProcessing | The methods and processes used to generate omics data from a biosample or org... | no |
MetagenomeAnnotationActivity | A workflow execution activity that provides functional and structural annotat... | no |
LibraryPreparation | no |
Properties
- Range: String
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
LinkML Source
name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
For workflow output it may describe the particular workflow stage that failed. (ie
Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_comment
domain_of:
- PlannedProcess
- WorkflowExecutionActivity
range: string