Slot: qc_comment

Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).

URI: nmdc:qc_comment

Applicable Classes

Name	Description	Modifies Slot
Culturing	A material processing that grows an organism under controlled conditions	no
Pooling	physical combination of several instances of like material	no
LibraryPreparation		no
CollectingBiosamplesFromSite		no
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
MetaproteomicsAnalysis		no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes o...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
Isolation	A material processing that separates an organism from a mixed sample by selec...	no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
Extraction	A material separation in which a desired component of an input material is se...	no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
PlannedProcess	A named thing that is executed according to a plan	no
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
MetatranscriptomeAssembly		no
FiltrationProcess	The process of segregation of phases; e	no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
MetabolomicsAnalysis		no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
MetatranscriptomeAnnotation		no
DataEmitterProcess	A process that generates data objects as output	no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no
NomAnalysis		no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no

Properties

Range: String

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
  For workflow output it may describe the particular workflow stage that failed. (ie
  Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_comment
domain_of:
- PlannedProcess
range: string