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Slot: reference for biomaterial (ref_biomaterial)

Primary publication if isolated before genome publication; otherwise, primary genome report

URI: MIXS:0000025

Applicable Classes

Name Description Modifies Slot
Organism A material entity that is a living or once-living individual. yes

Properties

  • Range: TextValue

  • Regex pattern: ^(PMID:\d+|doi:10\.\d{2,9}/.*|https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*))$

Examples

type: "nmdc:TextValue"
has_raw_value: "doi:10.1016/j.syapm.2018.01.009"

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000025

LinkML Source

name: ref_biomaterial
description: Primary publication if isolated before genome publication; otherwise,
  primary genome report
title: reference for biomaterial
examples:
- object:
    type: nmdc:TextValue
    has_raw_value: doi:10.1016/j.syapm.2018.01.009
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
slot_uri: MIXS:0000025
domain_of:
- Organism
range: TextValue
pattern: ^(PMID:\d+|doi:10\.\d{2,9}/.*|https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*))$
structured_pattern:
  syntax: ^({PMID}|{DOI}|{URL})$
  interpolated: true
  partial_match: true