Slot: purpose of sampling (samp_purpose)

The reason that the sample was collected

URI: MIXS:0001151

Applicable Classes

Name	Description	Modifies Slot
Biosample	Biological source material which can be characterized by an experiment.	no

Properties

• Range: String

Examples

• field trial

See Also

• https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
• https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml

Identifier and Mapping Information

Annotations

property	value
Expected_value	enumeration or

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	MIXS:0001151
close	GENEPIO:0001198, NCBI_BIOSAMPLE_ATTRIBUTE:purpose_of_sampling

LinkML Source

name: samp_purpose
annotations:
  Expected_value:
    tag: Expected_value
    value: enumeration or {text}
description: The reason that the sample was collected
title: purpose of sampling
notes:
- 'PHA4GE Wastewater Contextual Data Specification 4.4.4: close match to purpose of
  sampling (GENEPIO:0001198); the PHA4GE field is multivalued and restricted to its
  own picklist, this slot holds one free-text value. NCBI BioSample: close match to
  the purpose_of_sampling attribute, the NCBI harmonized name for this MIxS term (samp
  purpose is listed there as a synonym), mandatory in the PHA4GE.wwsurv.1.0 package.'
examples:
- value: field trial
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
- https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml
close_mappings:
- GENEPIO:0001198
- NCBI_BIOSAMPLE_ATTRIBUTE:purpose_of_sampling
rank: 1000
keywords:
- purpose
string_serialization: '[active surveillance in response to an outbreak|active surveillance
  not initiated by an outbreak|clinical trial|cluster investigation|environmental
  assessment|farm sample|field trial|for cause|industry internal investigation|market
  sample|passive surveillance|population based studies|research|research and development]
  or {text}'
slot_uri: MIXS:0001151
domain_of:
- Biosample
range: string