Slot: sample_growth_conditions

Free-text description of the in-vitro conditions under which the organism sample was grown or maintained — culture media, growth chamber settings, facility type, or other lab-controlled growth context. For environmental site context see sample_collection_site; for the source matrix the organism came out of see sample_isolated_from.

URI: nmdc:sample_growth_conditions

Applicable Classes

Name	Description	Modifies Slot
OrganismSample	A material sample in which all cells are expected to share the same genome	no

Properties

Range: String

Examples

Value
Greenhouse-grown
Cultivated indoor; substrate logs of supplemented oak
E. coli K-12 MG1655 broth culture infected with phage T4

Comments

On OrganismSample, this slot routes the growth-conditions half of JGI Isolate (NA) v19 form field 45 ("Collection Site or Growth Conditions"). The collection-site half routes to sample_collection_site. The submitter populates one or the other depending on whether the sample came from a field collection or from in-vitro maintenance.
Distinct from MIxS isol_growth_condt (MIXS:0000003), which expects a publication reference (DOI/PMID/URL pattern), not free-text growth conditions.

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: sample_growth_conditions
description: Free-text description of the in-vitro conditions under which the organism
  sample was grown or maintained — culture media, growth chamber settings, facility
  type, or other lab-controlled growth context. For environmental site context see
  `sample_collection_site`; for the source matrix the organism came out of see `sample_isolated_from`.
comments:
- On `OrganismSample`, this slot routes the growth-conditions half of JGI Isolate
  (NA) v19 form field 45 ("Collection Site or Growth Conditions"). The collection-site
  half routes to `sample_collection_site`. The submitter populates one or the other
  depending on whether the sample came from a field collection or from in-vitro maintenance.
- Distinct from MIxS `isol_growth_condt` (MIXS:0000003), which expects a publication
  reference (DOI/PMID/URL pattern), not free-text growth conditions.
examples:
- value: Greenhouse-grown
  description: Plant-tissue isolate maintained in greenhouse conditions
- value: Cultivated indoor; substrate logs of supplemented oak
  description: Mushroom (Lentinula edodes) cultivation context
- value: E. coli K-12 MG1655 broth culture infected with phage T4
  description: Viral-isolate growth context — host culture conditions
in_subset:
- jgi_isolate
from_schema: https://w3id.org/nmdc/nmdc
structured_aliases:
- literal_form: Collection Site or Growth Conditions
  predicate: NARROW_SYNONYM
  contexts:
  - https://jgi.doe.gov/isolate-submission-form/v19
rank: 1000
alias: sample_growth_conditions
domain_of:
- OrganismSample
range: string