Skip to content

Slot: scaf_n90

Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size.

URI: nmdc:scaf_n90

Inheritance

Applicable Classes

Name Description Modifies Slot
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MetatranscriptomeAssembly no

Properties

Identifier and Mapping Information

Schema Source

LinkML Source

name: scaf_n90
description: Given a set of scaffolds, each with its own length, the N90 count is
  defined as the smallest number of scaffolds whose length sum makes up 90% of genome
  size.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: metagenome_assembly_parameter
alias: scaf_n90
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float