Slot: wastewater system type (wastewater_system_type)
The kind of wastewater system the sample was taken from, such as a sanitary sewer, a combined sewer, a septic tank or a latrine.
URI: nmdc:wastewater_system_type
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Biosample | Biological source material which can be characterized by an experiment. | no |
Properties
- Range: WastewaterSystemTypeEnum
Examples
sanitary sewer system
Comments
- This classifies the collection system itself. sewage_type records whether the treatment plant is municipal or industrial and wastewater_type records where the wastewater originates (human waste, rainfall, storm drains); all three can be given.
See Also
- https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
- https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| close | GENEPIO:0100771, NCBI_BIOSAMPLE_ATTRIBUTE:ww_system_type |
LinkML Source
name: wastewater_system_type
description: The kind of wastewater system the sample was taken from, such as a sanitary
sewer, a combined sewer, a septic tank or a latrine.
title: wastewater system type
notes:
- 'PHA4GE Wastewater Contextual Data Specification 4.4.4: close match to wastewater
system type (GENEPIO:0100771); WastewaterSystemTypeEnum carries the PHA4GE picklist.'
- 'NCBI BioSample: close match to the ww_system_type attribute of the PHA4GE.wwsurv.1.0
package, where submitters have written Separated, Combined and sanitary sewer.'
comments:
- This classifies the collection system itself. sewage_type records whether the treatment
plant is municipal or industrial and wastewater_type records where the wastewater
originates (human waste, rainfall, storm drains); all three can be given.
examples:
- value: sanitary sewer system
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
- https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml
close_mappings:
- GENEPIO:0100771
- NCBI_BIOSAMPLE_ATTRIBUTE:ww_system_type
rank: 1000
domain_of:
- Biosample
range: WastewaterSystemTypeEnum