Subset: JgiIsolate
Slots originating from the JGI Isolate (NA) v19 submission form that are not already captured by MIxS or other existing standards. These slots support organism identity, strain verification, purity assessment, and biosafety classification for cultured isolate submissions to JGI.
URI: JgiIsolate
Comments
- Mirrors the jgi_isolate subset defined in nmdc-schema basic_slots.yaml. Imported slots (e.g. organism_genus) carry in_subset: jgi_isolate, so the subset must be declared here for downstream LinkML generators to resolve it.
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Slots in subset
| Slot | Description |
|---|---|
| estimated_size | The estimated size of the genome prior to sequencing |
| gc_content | Estimated GC content as a percentage |
| host_genus | Genus of the host organism that the sample was collected from |
| host_species | Species of the host organism that the sample was collected from |
| host_strain | Strain of the host organism that the sample was collected from |
| isolate_name | Isolate or mutant name |
| organism_genus | Genus of the organism |
| organism_species | Species of the organism |
| strain_name | Strain or cultivar name of the organism |