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Class: StorageProcessFlat

A planned process with the objective to preserve and protect material entities by placing them in an identified location which may have a controlled environment. Flattened tabular form of 'StorageProcess'. Attributes are the union of base-class slots and slots from concrete subclasses of 'StorageProcess' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/StorageProcessFlat

 classDiagram
    class StorageProcessFlat
    click StorageProcessFlat href "../StorageProcessFlat/"
      StorageProcessFlat : alternative_identifiers

      StorageProcessFlat : contained_in





        StorageProcessFlat --> "0..1" ContainerCategoryEnum : contained_in
        click ContainerCategoryEnum href "../ContainerCategoryEnum/"



      StorageProcessFlat : description

      StorageProcessFlat : end_date

      StorageProcessFlat : has_input

      StorageProcessFlat : has_output

      StorageProcessFlat : id

      StorageProcessFlat : name

      StorageProcessFlat : processing_institution





        StorageProcessFlat --> "0..1" ProcessingInstitutionEnum : processing_institution
        click ProcessingInstitutionEnum href "../ProcessingInstitutionEnum/"



      StorageProcessFlat : protocol_link_analysis_type





        StorageProcessFlat --> "*" AnalysisTypeEnum : protocol_link_analysis_type
        click AnalysisTypeEnum href "../AnalysisTypeEnum/"



      StorageProcessFlat : protocol_link_description

      StorageProcessFlat : protocol_link_name

      StorageProcessFlat : protocol_link_protocol_for





        StorageProcessFlat --> "0..1" ProtocolForEnum : protocol_link_protocol_for
        click ProtocolForEnum href "../ProtocolForEnum/"



      StorageProcessFlat : protocol_link_url

      StorageProcessFlat : qc_comment

      StorageProcessFlat : qc_status





        StorageProcessFlat --> "0..1" StatusEnum : qc_status
        click StatusEnum href "../StatusEnum/"



      StorageProcessFlat : start_date

      StorageProcessFlat : temperature_has_maximum_numeric_value

      StorageProcessFlat : temperature_has_minimum_numeric_value

      StorageProcessFlat : temperature_has_numeric_value

      StorageProcessFlat : temperature_has_raw_value

      StorageProcessFlat : temperature_has_unit





        StorageProcessFlat --> "0..1" UnitEnum : temperature_has_unit
        click UnitEnum href "../UnitEnum/"



      StorageProcessFlat : type

Slots

Name Cardinality and Range Description Inheritance
alternative_identifiers *
Uriorcurie		 A list of alternative identifiers for the entity direct
contained_in 0..1
ContainerCategoryEnum		 A type of container direct
description 0..1
String		 a human-readable description of a thing direct
end_date 0..1
String		 The date on which any process or activity was ended direct
has_input *
String		 An input to a process direct
has_output *
String		 An output from a process direct
id 1
Uriorcurie		 A unique identifier for a thing direct
name 0..1
String		 A human readable label for an entity direct
processing_institution 0..1
ProcessingInstitutionEnum		 The organization that processed the sample direct
protocol_link_analysis_type *
AnalysisTypeEnum		 Select all the data types associated or available for this biosample Flattene... direct
protocol_link_description 0..1
String		 a human-readable description of a thing Flattened from nested slot 'protocol_... direct
protocol_link_name 0..1
String		 A human readable label for an entity Flattened from nested slot 'protocol_lin... direct
protocol_link_protocol_for 0..1
ProtocolForEnum		 The type of planned process that the protocol describes direct
protocol_link_url 0..1
String		 Flattened from nested slot 'protocol_link direct
qc_comment 0..1
String		 Slot to store additional comments about laboratory or workflow output direct
qc_status 0..1
StatusEnum		 Stores information about the result of a process (ie the process of sequencin... direct
start_date 0..1
String		 The date on which any process or activity was started direct
temperature_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
temperature_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
temperature_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'temperature direct
temperature_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
temperature_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'temperature direct
type 1
Uriorcurie		 the class_uri of the class that has been instantiated direct

Identifier and Mapping Information

Annotations

property value
table_name storage_process_set
source_class StorageProcess

Schema Source

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/StorageProcessFlat
native https://w3id.org/nmdc/nmdc-schema-flattened/StorageProcessFlat

LinkML Source

Direct

name: StorageProcessFlat
annotations:
  table_name:
    tag: table_name
    value: storage_process_set
  source_class:
    tag: source_class
    value: StorageProcess
description: A planned process with the objective to preserve and protect material
  entities by placing them in an identified  location which may have a controlled
  environment. Flattened tabular form of 'StorageProcess'. Attributes are the union
  of base-class slots and slots from concrete subclasses of 'StorageProcess' that
  may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  contained_in:
    name: contained_in
    description: A type of container.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: ContainerCategoryEnum
    multivalued: false
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  end_date:
    name: end_date
    description: The date on which any process or activity was ended
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  has_input:
    name: has_input
    description: An input to a process. Reference by identifier; original range was
      class 'Sample'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_input
    - DataGenerationFlat
    - data_generation_set_has_input
    - MaterialProcessingFlat
    - material_processing_set_has_input
    - StorageProcessFlat
    - storage_process_set_has_input
    - WorkflowExecutionFlat
    - workflow_execution_set_has_input
    range: string
    multivalued: true
  has_output:
    name: has_output
    description: An output from a process. Reference by identifier; original range
      was class 'ProcessedSample'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_output
    - DataGenerationFlat
    - data_generation_set_has_output
    - MaterialProcessingFlat
    - material_processing_set_has_output
    - StorageProcessFlat
    - storage_process_set_has_output
    - WorkflowExecutionFlat
    - workflow_execution_set_has_output
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  processing_institution:
    name: processing_institution
    description: The organization that processed the sample.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProcessingInstitutionEnum
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  qc_comment:
    name: qc_comment
    description: Slot to store additional comments about laboratory or workflow output.
      For workflow output it may describe the particular workflow stage that failed.
      (ie Failed at call-stage due to a malformed fastq file).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  qc_status:
    name: qc_status
    description: Stores information about the result of a process (ie the process
      of sequencing a library may have for qc_status of 'fail' if not enough data
      was generated)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: StatusEnum
    multivalued: false
  start_date:
    name: start_date
    description: The date on which any process or activity was started
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  temperature_has_maximum_numeric_value:
    name: temperature_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_minimum_numeric_value:
    name: temperature_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_numeric_value:
    name: temperature_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'temperature.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_raw_value:
    name: temperature_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'temperature.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: string
    required: false
    multivalued: false
  temperature_has_unit:
    name: temperature_has_unit
    description: The unit of the quantity Flattened from nested slot 'temperature.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: UnitEnum
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false

Induced

name: StorageProcessFlat
annotations:
  table_name:
    tag: table_name
    value: storage_process_set
  source_class:
    tag: source_class
    value: StorageProcess
description: A planned process with the objective to preserve and protect material
  entities by placing them in an identified  location which may have a controlled
  environment. Flattened tabular form of 'StorageProcess'. Attributes are the union
  of base-class slots and slots from concrete subclasses of 'StorageProcess' that
  may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  contained_in:
    name: contained_in
    description: A type of container.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: ContainerCategoryEnum
    multivalued: false
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  end_date:
    name: end_date
    description: The date on which any process or activity was ended
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  has_input:
    name: has_input
    description: An input to a process. Reference by identifier; original range was
      class 'Sample'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_input
    - DataGenerationFlat
    - data_generation_set_has_input
    - MaterialProcessingFlat
    - material_processing_set_has_input
    - StorageProcessFlat
    - storage_process_set_has_input
    - WorkflowExecutionFlat
    - workflow_execution_set_has_input
    range: string
    multivalued: true
  has_output:
    name: has_output
    description: An output from a process. Reference by identifier; original range
      was class 'ProcessedSample'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_output
    - DataGenerationFlat
    - data_generation_set_has_output
    - MaterialProcessingFlat
    - material_processing_set_has_output
    - StorageProcessFlat
    - storage_process_set_has_output
    - WorkflowExecutionFlat
    - workflow_execution_set_has_output
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    owner: StorageProcessFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  processing_institution:
    name: processing_institution
    description: The organization that processed the sample.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProcessingInstitutionEnum
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  qc_comment:
    name: qc_comment
    description: Slot to store additional comments about laboratory or workflow output.
      For workflow output it may describe the particular workflow stage that failed.
      (ie Failed at call-stage due to a malformed fastq file).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  qc_status:
    name: qc_status
    description: Stores information about the result of a process (ie the process
      of sequencing a library may have for qc_status of 'fail' if not enough data
      was generated)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: StatusEnum
    multivalued: false
  start_date:
    name: start_date
    description: The date on which any process or activity was started
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  temperature_has_maximum_numeric_value:
    name: temperature_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_minimum_numeric_value:
    name: temperature_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_numeric_value:
    name: temperature_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'temperature.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_raw_value:
    name: temperature_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'temperature.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: string
    required: false
    multivalued: false
  temperature_has_unit:
    name: temperature_has_unit
    description: The unit of the quantity Flattened from nested slot 'temperature.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: UnitEnum
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StorageProcessFlat
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false