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Class: WorkflowExecutionFlat

Represents an instance of an execution of a particular workflow Flattened tabular form of 'WorkflowExecution'. Attributes are the union of base-class slots and slots from concrete subclasses of 'WorkflowExecution' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionFlat

 classDiagram
    class WorkflowExecutionFlat
    click WorkflowExecutionFlat href "../WorkflowExecutionFlat/"
      WorkflowExecutionFlat : alternative_identifiers

      WorkflowExecutionFlat : asm_score

      WorkflowExecutionFlat : binned_contig_num

      WorkflowExecutionFlat : c13_isotopologue_count

      WorkflowExecutionFlat : contig_bp

      WorkflowExecutionFlat : contigs

      WorkflowExecutionFlat : ctg_l50

      WorkflowExecutionFlat : ctg_l90

      WorkflowExecutionFlat : ctg_logsum

      WorkflowExecutionFlat : ctg_max

      WorkflowExecutionFlat : ctg_n50

      WorkflowExecutionFlat : ctg_n90

      WorkflowExecutionFlat : ctg_powsum

      WorkflowExecutionFlat : description

      WorkflowExecutionFlat : end_date

      WorkflowExecutionFlat : ended_at_time

      WorkflowExecutionFlat : execution_resource





        WorkflowExecutionFlat --> "0..1" ExecutionResourceEnum : execution_resource
        click ExecutionResourceEnum href "../ExecutionResourceEnum/"



      WorkflowExecutionFlat : gap_pct

      WorkflowExecutionFlat : gc_avg

      WorkflowExecutionFlat : gc_std

      WorkflowExecutionFlat : git_url

      WorkflowExecutionFlat : gold_analysis_project_identifiers

      WorkflowExecutionFlat : has_input

      WorkflowExecutionFlat : has_output

      WorkflowExecutionFlat : id

      WorkflowExecutionFlat : img_identifiers

      WorkflowExecutionFlat : input_base_count

      WorkflowExecutionFlat : input_contig_num

      WorkflowExecutionFlat : input_read_bases

      WorkflowExecutionFlat : input_read_count

      WorkflowExecutionFlat : insdc_assembly_identifiers

      WorkflowExecutionFlat : low_depth_contig_num

      WorkflowExecutionFlat : mean_peptide_count

      WorkflowExecutionFlat : metabolomics_analysis_category





        WorkflowExecutionFlat --> "0..1" MetabolomicsAnalysisCategoryEnum : metabolomics_analysis_category
        click MetabolomicsAnalysisCategoryEnum href "../MetabolomicsAnalysisCategoryEnum/"



      WorkflowExecutionFlat : metaproteomics_analysis_category





        WorkflowExecutionFlat --> "0..1" MetaproteomicsAnalysisCategoryEnum : metaproteomics_analysis_category
        click MetaproteomicsAnalysisCategoryEnum href "../MetaproteomicsAnalysisCategoryEnum/"



      WorkflowExecutionFlat : name

      WorkflowExecutionFlat : num_aligned_reads

      WorkflowExecutionFlat : num_input_reads

      WorkflowExecutionFlat : output_base_count

      WorkflowExecutionFlat : output_read_bases

      WorkflowExecutionFlat : output_read_count

      WorkflowExecutionFlat : peak_assignment_count

      WorkflowExecutionFlat : peak_count

      WorkflowExecutionFlat : peptide_to_spectrum_match_count

      WorkflowExecutionFlat : peptide_to_spectrum_match_rate_has_maximum_numeric_value

      WorkflowExecutionFlat : peptide_to_spectrum_match_rate_has_minimum_numeric_value

      WorkflowExecutionFlat : peptide_to_spectrum_match_rate_has_numeric_value

      WorkflowExecutionFlat : peptide_to_spectrum_match_rate_has_raw_value

      WorkflowExecutionFlat : peptide_to_spectrum_match_rate_has_unit





        WorkflowExecutionFlat --> "0..1" UnitEnum : peptide_to_spectrum_match_rate_has_unit
        click UnitEnum href "../UnitEnum/"



      WorkflowExecutionFlat : processing_institution





        WorkflowExecutionFlat --> "1" ProcessingInstitutionEnum : processing_institution
        click ProcessingInstitutionEnum href "../ProcessingInstitutionEnum/"



      WorkflowExecutionFlat : processing_institution_workflow_metadata

      WorkflowExecutionFlat : protocol_link_analysis_type





        WorkflowExecutionFlat --> "*" AnalysisTypeEnum : protocol_link_analysis_type
        click AnalysisTypeEnum href "../AnalysisTypeEnum/"



      WorkflowExecutionFlat : protocol_link_description

      WorkflowExecutionFlat : protocol_link_name

      WorkflowExecutionFlat : protocol_link_protocol_for





        WorkflowExecutionFlat --> "0..1" ProtocolForEnum : protocol_link_protocol_for
        click ProtocolForEnum href "../ProtocolForEnum/"



      WorkflowExecutionFlat : protocol_link_url

      WorkflowExecutionFlat : qc_comment

      WorkflowExecutionFlat : qc_status





        WorkflowExecutionFlat --> "0..1" StatusEnum : qc_status
        click StatusEnum href "../StatusEnum/"



      WorkflowExecutionFlat : razor_protein_count

      WorkflowExecutionFlat : scaf_bp

      WorkflowExecutionFlat : scaf_l50

      WorkflowExecutionFlat : scaf_l90

      WorkflowExecutionFlat : scaf_l_gt50k

      WorkflowExecutionFlat : scaf_logsum

      WorkflowExecutionFlat : scaf_max

      WorkflowExecutionFlat : scaf_n50

      WorkflowExecutionFlat : scaf_n90

      WorkflowExecutionFlat : scaf_n_gt50k

      WorkflowExecutionFlat : scaf_pct_gt50k

      WorkflowExecutionFlat : scaf_powsum

      WorkflowExecutionFlat : scaffolds

      WorkflowExecutionFlat : start_date

      WorkflowExecutionFlat : started_at_time

      WorkflowExecutionFlat : superseded_by

      WorkflowExecutionFlat : too_short_contig_num

      WorkflowExecutionFlat : total_protein_count

      WorkflowExecutionFlat : type

      WorkflowExecutionFlat : unbinned_contig_num

      WorkflowExecutionFlat : unique_peptide_seq_count

      WorkflowExecutionFlat : uses_calibration

      WorkflowExecutionFlat : version

      WorkflowExecutionFlat : was_informed_by

Slots

Name Cardinality and Range Description Inheritance
alternative_identifiers *
Uriorcurie		 A list of alternative identifiers for the entity direct
asm_score 0..1
Float		 A score for comparing metagenomic assembly quality from same sample direct
binned_contig_num 0..1
Integer		 Number of contigs that ended up in a medium or high quality bin direct
c13_isotopologue_count 0..1
Integer		 The number of two-dimensional mass-to-charge (m/z) versus retention time feat... direct
contig_bp 0..1
Float		 Total size in bp of all contigs direct
contigs 0..1
Float		 The sum of the (length*log(length)) of all contigs, times some constant direct
ctg_l50 0..1
Float		 Given a set of contigs, the L50 is defined as the sequence length of the shor... direct
ctg_l90 0..1
Float		 The L90 statistic is less than or equal to the L50 statistic; it is the lengt... direct
ctg_logsum 0..1
Float		 Maximum contig length direct
ctg_max 0..1
Float		 Maximum contig length direct
ctg_n50 0..1
Float		 Given a set of contigs, each with its own length, the N50 count is defined as... direct
ctg_n90 0..1
Float		 Given a set of contigs, each with its own length, the N90 count is defined as... direct
ctg_powsum 0..1
Float		 Powersum of all contigs is the same as logsum except that it uses the sum of ... direct
description 0..1
String		 a human-readable description of a thing direct
end_date 0..1
String		 The date on which any process or activity was ended direct
ended_at_time 0..1
String		 direct
execution_resource 0..1
ExecutionResourceEnum		 The computing resource or facility where the workflow was executed direct
gap_pct 0..1
Float		 The gap size percentage of all scaffolds direct
gc_avg 0..1
Float		 Average of GC content of all contigs direct
gc_std 0..1
Float		 Standard deviation of GC content of all contigs direct
git_url 1
String		 The url that points to the exact software repository location used to run a w... direct
gold_analysis_project_identifiers *
ExternalIdentifier		 identifiers for corresponding analysis projects in GOLD direct
has_input 1..*
String		 An input to a process direct
has_output *
String		 An output from a process direct
id 1
Uriorcurie		 A unique identifier for a thing direct
img_identifiers *
ExternalIdentifier		 A list of identifiers that relate the biosample to records in the IMG databas... direct
input_base_count 0..1
Float		 The nucleotide base count number of input reads for QC analysis direct
input_contig_num 0..1
Integer		 Total number of input contigs direct
input_read_bases 0..1
Float		 TODO direct
input_read_count 0..1
Float		 The sequence count number of input reads for QC analysis direct
insdc_assembly_identifiers *
ExternalIdentifier		 Polymorphic subclass-specific slot (from 'MetagenomeAssembly') direct
low_depth_contig_num 0..1
Integer		 Number of contigs which were excluded from binning for depth of coverage direct
mean_peptide_count 0..1
Float		 The average number of peptides per protein identified in the metaproteomics a... direct
metabolomics_analysis_category 0..1
MetabolomicsAnalysisCategoryEnum		 The category of metabolomics analysis being performed direct
metaproteomics_analysis_category 0..1
MetaproteomicsAnalysisCategoryEnum		 The category of metaproteomics analysis being performed direct
name 0..1
String		 A human readable label for an entity direct
num_aligned_reads 0..1
Float		 The sequence count number of input reads aligned to assembled contigs direct
num_input_reads 0..1
Float		 The sequence count number of input reads for assembly direct
output_base_count 0..1
Float		 After QC analysis nucleotide base count number direct
output_read_bases 0..1
Float		 TODO direct
output_read_count 0..1
Float		 After QC analysis sequence count number direct
peak_assignment_count 0..1
Integer		 The total number of two dimensional mass to charge (m/z) : retention time fea... direct
peak_count 0..1
Integer		 The total number of two dimensional mass to charge (m/z) : retention time fea... direct
peptide_to_spectrum_match_count 0..1
Integer		 Total number of MS2 spectra with a false discovery rate passing peptide match direct
peptide_to_spectrum_match_rate_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
peptide_to_spectrum_match_rate_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
peptide_to_spectrum_match_rate_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'peptide_to_spectr... direct
peptide_to_spectrum_match_rate_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
peptide_to_spectrum_match_rate_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'peptide_to_spectrum_matc... direct
processing_institution 1
ProcessingInstitutionEnum		 The organization that processed the sample direct
processing_institution_workflow_metadata 0..1
String		 Information about how workflow results were generated when the processing is ... direct
protocol_link_analysis_type *
AnalysisTypeEnum		 Select all the data types associated or available for this biosample Flattene... direct
protocol_link_description 0..1
String		 a human-readable description of a thing Flattened from nested slot 'protocol_... direct
protocol_link_name 0..1
String		 A human readable label for an entity Flattened from nested slot 'protocol_lin... direct
protocol_link_protocol_for 0..1
ProtocolForEnum		 The type of planned process that the protocol describes direct
protocol_link_url 0..1
String		 Flattened from nested slot 'protocol_link direct
qc_comment 0..1
String		 Slot to store additional comments about laboratory or workflow output direct
qc_status 0..1
StatusEnum		 Stores information about the result of a process (ie the process of sequencin... direct
razor_protein_count 0..1
Integer		 The minimal protein set that describes the unique peptide sequences identifie... direct
scaf_bp 0..1
Float		 Total size in bp of all scaffolds direct
scaf_l50 0..1
Float		 Given a set of scaffolds, the L50 is defined as the sequence length of the sh... direct
scaf_l90 0..1
Float		 The L90 statistic is less than or equal to the L50 statistic; it is the lengt... direct
scaf_l_gt50k 0..1
Float		 Total size in bp of all scaffolds greater than 50 KB direct
scaf_logsum 0..1
Float		 The sum of the (length*log(length)) of all scaffolds, times some constant direct
scaf_max 0..1
Float		 Maximum scaffold length direct
scaf_n50 0..1
Float		 Given a set of scaffolds, each with its own length, the N50 count is defined ... direct
scaf_n90 0..1
Float		 Given a set of scaffolds, each with its own length, the N90 count is defined ... direct
scaf_n_gt50k 0..1
Float		 Total sequence count of scaffolds greater than 50 KB direct
scaf_pct_gt50k 0..1
Float		 Total sequence size percentage of scaffolds greater than 50 KB direct
scaf_powsum 0..1
Float		 Powersum of all scaffolds is the same as logsum except that it uses the sum o... direct
scaffolds 0..1
Float		 Total sequence count of all scaffolds direct
start_date 0..1
String		 The date on which any process or activity was started direct
started_at_time 1
String		 direct
superseded_by 0..1
String		 Links a DataObject or WorkflowExecution record to a newer WorkflowExecution t... direct
too_short_contig_num 0..1
Integer		 Number of contigs which were excluded from binning for length direct
total_protein_count 0..1
Integer		 The total number of distinct proteins identified in the metaproteomics analys... direct
type 1
Uriorcurie		 the class_uri of the class that has been instantiated direct
unbinned_contig_num 0..1
Integer		 Number of contigs which did not end up in a medium or high quality bin direct
unique_peptide_seq_count 0..1
Integer		 The number of distinct peptide sequences identified in the LC-MS/MS file direct
uses_calibration *
String		 calibration information is used by a process Reference by identifier; origina... direct
version 0..1
String		 The NMDC release tag for a given workflow release used for data processing direct
was_informed_by 1..*
String		 The primary DataGeneration subclass that the WorkflowExecution subclass depen... direct

Identifier and Mapping Information

Annotations

property value
table_name workflow_execution_set
source_class WorkflowExecution

Schema Source

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionFlat
native https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionFlat

LinkML Source

Direct

name: WorkflowExecutionFlat
annotations:
  table_name:
    tag: table_name
    value: workflow_execution_set
  source_class:
    tag: source_class
    value: WorkflowExecution
description: Represents an instance of an execution of a particular workflow Flattened
  tabular form of 'WorkflowExecution'. Attributes are the union of base-class slots
  and slots from concrete subclasses of 'WorkflowExecution' that may appear via the
  'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  asm_score:
    name: asm_score
    description: A score for comparing metagenomic assembly quality from same sample..
      Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  binned_contig_num:
    name: binned_contig_num
    description: Number of contigs that ended up in a medium or high quality bin..
      Polymorphic subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  c13_isotopologue_count:
    name: c13_isotopologue_count
    description: The number of two-dimensional mass-to-charge (m/z) versus retention
      time features that have been isotopically characterized as either 13C-containing
      isotopologues or monoisotopic (12C-only) features.. Polymorphic subclass-specific
      slot (from 'MetabolomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  contig_bp:
    name: contig_bp
    description: Total size in bp of all contigs.. Polymorphic subclass-specific slot
      (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  contigs:
    name: contigs
    description: The sum of the (length*log(length)) of all contigs, times some constant.  Increase
      the contiguity, the score will increase. Polymorphic subclass-specific slot
      (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_l50:
    name: ctg_l50
    description: Given a set of contigs, the L50 is defined as the sequence length
      of the shortest contig at 50% of the total genome length.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_l90:
    name: ctg_l90
    description: The L90 statistic is less than or equal to the L50 statistic; it
      is the length for which the collection of all contigs of that length or longer
      contains at least 90% of the sum of the lengths of all contigs.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_logsum:
    name: ctg_logsum
    description: Maximum contig length.. Polymorphic subclass-specific slot (from
      'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_max:
    name: ctg_max
    description: Maximum contig length.. Polymorphic subclass-specific slot (from
      'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_n50:
    name: ctg_n50
    description: Given a set of contigs, each with its own length, the N50 count is
      defined as the smallest number_of_contigs whose length sum makes up half of
      genome size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_n90:
    name: ctg_n90
    description: Given a set of contigs, each with its own length, the N90 count is
      defined as the smallest number of contigs whose length sum makes up 90% of genome
      size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_powsum:
    name: ctg_powsum
    description: Powersum of all contigs is the same as logsum except that it uses
      the sum of (length*(length^P)) for some power P (default P=0.25).. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  end_date:
    name: end_date
    description: The date on which any process or activity was ended
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  ended_at_time:
    name: ended_at_time
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  execution_resource:
    name: execution_resource
    description: The computing resource or facility where the workflow was executed.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: ExecutionResourceEnum
    multivalued: false
  gap_pct:
    name: gap_pct
    description: The gap size percentage of all scaffolds.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  gc_avg:
    name: gc_avg
    description: Average of GC content of all contigs.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  gc_std:
    name: gc_std
    description: Standard deviation of GC content of all contigs.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  git_url:
    name: git_url
    description: The url that points to the exact software repository location used
      to run a workflow
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: string
    required: true
    multivalued: false
  gold_analysis_project_identifiers:
    name: gold_analysis_project_identifiers
    description: identifiers for corresponding analysis projects in GOLD. Polymorphic
      subclass-specific slot (from 'MetagenomeAnnotation').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: external_identifier
    required: false
    multivalued: true
  has_input:
    name: has_input
    description: An input to a process. Reference by identifier; original range was
      class 'DataObject'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_input
    - DataGenerationFlat
    - data_generation_set_has_input
    - MaterialProcessingFlat
    - material_processing_set_has_input
    - StorageProcessFlat
    - storage_process_set_has_input
    - WorkflowExecutionFlat
    - workflow_execution_set_has_input
    range: string
    required: true
    multivalued: true
  has_output:
    name: has_output
    description: An output from a process. Reference by identifier; original range
      was class 'DataObject'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_output
    - DataGenerationFlat
    - data_generation_set_has_output
    - MaterialProcessingFlat
    - material_processing_set_has_output
    - StorageProcessFlat
    - storage_process_set_has_output
    - WorkflowExecutionFlat
    - workflow_execution_set_has_output
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  img_identifiers:
    name: img_identifiers
    description: A list of identifiers that relate the biosample to records in the
      IMG database.. Polymorphic subclass-specific slot (from 'MetatranscriptomeExpressionAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - WorkflowExecutionFlat
    range: external_identifier
    required: false
    multivalued: true
  input_base_count:
    name: input_base_count
    description: The nucleotide base count number of input reads for QC analysis..
      Polymorphic subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  input_contig_num:
    name: input_contig_num
    description: Total number of input contigs.. Polymorphic subclass-specific slot
      (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  input_read_bases:
    name: input_read_bases
    description: TODO      . Polymorphic subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  input_read_count:
    name: input_read_count
    description: The sequence count number of input reads for QC analysis.. Polymorphic
      subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  insdc_assembly_identifiers:
    name: insdc_assembly_identifiers
    description: Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: external_identifier
    required: false
    multivalued: true
  low_depth_contig_num:
    name: low_depth_contig_num
    description: Number of contigs which were excluded from binning for depth of coverage..
      Polymorphic subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  mean_peptide_count:
    name: mean_peptide_count
    description: The average number of peptides per protein identified in the metaproteomics
      analysis.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  metabolomics_analysis_category:
    name: metabolomics_analysis_category
    description: The category of metabolomics analysis being performed.. Polymorphic
      subclass-specific slot (from 'MetabolomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: MetabolomicsAnalysisCategoryEnum
    required: false
    multivalued: false
  metaproteomics_analysis_category:
    name: metaproteomics_analysis_category
    description: The category of metaproteomics analysis being performed.. Polymorphic
      subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: MetaproteomicsAnalysisCategoryEnum
    required: false
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  num_aligned_reads:
    name: num_aligned_reads
    description: The sequence count number of input reads aligned to assembled contigs..
      Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  num_input_reads:
    name: num_input_reads
    description: The sequence count number of input reads for assembly.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  output_base_count:
    name: output_base_count
    description: After QC analysis nucleotide base count number.. Polymorphic subclass-specific
      slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  output_read_bases:
    name: output_read_bases
    description: TODO. Polymorphic subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  output_read_count:
    name: output_read_count
    description: After QC analysis sequence count number.. Polymorphic subclass-specific
      slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  peak_assignment_count:
    name: peak_assignment_count
    description: 'The total number of two dimensional mass to charge (m/z) : retention
      time features with associated metabolite identification in the metabolomics
      or lipidomics analysis.. Polymorphic subclass-specific slot (from ''MetabolomicsAnalysis'').'
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  peak_count:
    name: peak_count
    description: 'The total number of two dimensional mass to charge (m/z) : retention
      time features detected in the metabolomics analysis.. Polymorphic subclass-specific
      slot (from ''MetabolomicsAnalysis'').'
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  peptide_to_spectrum_match_count:
    name: peptide_to_spectrum_match_count
    description: Total number of MS2 spectra with a false discovery rate passing peptide
      match.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_maximum_numeric_value:
    name: peptide_to_spectrum_match_rate_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'peptide_to_spectrum_match_rate.has_maximum_numeric_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: decimal
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_minimum_numeric_value:
    name: peptide_to_spectrum_match_rate_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'peptide_to_spectrum_match_rate.has_minimum_numeric_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: decimal
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_numeric_value:
    name: peptide_to_spectrum_match_rate_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'peptide_to_spectrum_match_rate.has_numeric_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: decimal
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_raw_value:
    name: peptide_to_spectrum_match_rate_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'peptide_to_spectrum_match_rate.has_raw_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_unit:
    name: peptide_to_spectrum_match_rate_has_unit
    description: The unit of the quantity Flattened from nested slot 'peptide_to_spectrum_match_rate.has_unit'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: UnitEnum
    required: false
    multivalued: false
  processing_institution:
    name: processing_institution
    description: The organization that processed the sample.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProcessingInstitutionEnum
    required: true
    multivalued: false
  processing_institution_workflow_metadata:
    name: processing_institution_workflow_metadata
    description: Information about how workflow results were generated when the processing
      is done by an external organziation (e.g., JGI) such as software tool name and
      version or pipeline name and version.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  qc_comment:
    name: qc_comment
    description: Slot to store additional comments about laboratory or workflow output.
      For workflow output it may describe the particular workflow stage that failed.
      (ie Failed at call-stage due to a malformed fastq file).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  qc_status:
    name: qc_status
    description: Stores information about the result of a process (ie the process
      of sequencing a library may have for qc_status of 'fail' if not enough data
      was generated)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: StatusEnum
    multivalued: false
  razor_protein_count:
    name: razor_protein_count
    description: The minimal protein set that describes the unique peptide sequences
      identified after applying Razor Protein parsimony.. Polymorphic subclass-specific
      slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  scaf_bp:
    name: scaf_bp
    description: Total size in bp of all scaffolds.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_l50:
    name: scaf_l50
    description: Given a set of scaffolds, the L50 is defined as the sequence length
      of the shortest scaffold at 50% of the total genome length.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_l90:
    name: scaf_l90
    description: The L90 statistic is less than or equal to the L50 statistic; it
      is the length for which the collection of all scaffolds of that length or longer
      contains at least 90% of the sum of the lengths of all scaffolds.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_l_gt50k:
    name: scaf_l_gt50k
    description: Total size in bp of all scaffolds greater than 50 KB.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_logsum:
    name: scaf_logsum
    description: The sum of the (length*log(length)) of all scaffolds, times some
      constant.  Increase the contiguity, the score will increase. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_max:
    name: scaf_max
    description: Maximum scaffold length.. Polymorphic subclass-specific slot (from
      'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_n50:
    name: scaf_n50
    description: Given a set of scaffolds, each with its own length, the N50 count
      is defined as the smallest number of scaffolds whose length sum makes up half
      of genome size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_n90:
    name: scaf_n90
    description: Given a set of scaffolds, each with its own length, the N90 count
      is defined as the smallest number of scaffolds whose length sum makes up 90%
      of genome size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_n_gt50k:
    name: scaf_n_gt50k
    description: Total sequence count of scaffolds greater than 50 KB.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_pct_gt50k:
    name: scaf_pct_gt50k
    description: Total sequence size percentage of scaffolds greater than 50 KB..
      Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_powsum:
    name: scaf_powsum
    description: Powersum of all scaffolds is the same as logsum except that it uses
      the sum of (length*(length^P)) for some power P (default P=0.25).. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaffolds:
    name: scaffolds
    description: Total sequence count of all scaffolds.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  start_date:
    name: start_date
    description: The date on which any process or activity was started
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  started_at_time:
    name: started_at_time
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: string
    required: true
    multivalued: false
  superseded_by:
    name: superseded_by
    description: Links a DataObject or WorkflowExecution record to a newer WorkflowExecution
      that  supersedes it, marking this record as outdated. The linked WorkflowExecution
      or resultant DataObjects should be used in favor of this record. Reference by
      identifier; original range was class 'WorkflowExecution'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataObjectFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  too_short_contig_num:
    name: too_short_contig_num
    description: Number of contigs which were excluded from binning for length.. Polymorphic
      subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  total_protein_count:
    name: total_protein_count
    description: The total number of distinct proteins identified in the metaproteomics
      analysis.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  unbinned_contig_num:
    name: unbinned_contig_num
    description: Number of contigs which did not end up in a medium or high quality
      bin.. Polymorphic subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  unique_peptide_seq_count:
    name: unique_peptide_seq_count
    description: The number of distinct peptide sequences identified in the LC-MS/MS
      file.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  uses_calibration:
    name: uses_calibration
    description: calibration information is used by a process Reference by identifier;
      original range was class 'CalibrationInformation'.. Polymorphic subclass-specific
      slot (from 'MetabolomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    - workflow_execution_set_uses_calibration
    range: string
    required: false
    multivalued: true
  version:
    name: version
    description: The NMDC release tag for a given workflow release used for data processing.
      If workflows are processed externally, as denoted by processing_institution,
      this value represents the best mapping between a processing institution's (e.g.,
      JGI) workflow metadata and a NMDC tagged release.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  was_informed_by:
    name: was_informed_by
    description: The primary DataGeneration subclass that the WorkflowExecution subclass
      depends on. Reference by identifier; original range was class 'DataGeneration'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - WorkflowExecutionFlat
    - workflow_execution_set_was_informed_by
    range: string
    required: true
    multivalued: true

Induced

name: WorkflowExecutionFlat
annotations:
  table_name:
    tag: table_name
    value: workflow_execution_set
  source_class:
    tag: source_class
    value: WorkflowExecution
description: Represents an instance of an execution of a particular workflow Flattened
  tabular form of 'WorkflowExecution'. Attributes are the union of base-class slots
  and slots from concrete subclasses of 'WorkflowExecution' that may appear via the
  'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  asm_score:
    name: asm_score
    description: A score for comparing metagenomic assembly quality from same sample..
      Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  binned_contig_num:
    name: binned_contig_num
    description: Number of contigs that ended up in a medium or high quality bin..
      Polymorphic subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  c13_isotopologue_count:
    name: c13_isotopologue_count
    description: The number of two-dimensional mass-to-charge (m/z) versus retention
      time features that have been isotopically characterized as either 13C-containing
      isotopologues or monoisotopic (12C-only) features.. Polymorphic subclass-specific
      slot (from 'MetabolomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  contig_bp:
    name: contig_bp
    description: Total size in bp of all contigs.. Polymorphic subclass-specific slot
      (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  contigs:
    name: contigs
    description: The sum of the (length*log(length)) of all contigs, times some constant.  Increase
      the contiguity, the score will increase. Polymorphic subclass-specific slot
      (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_l50:
    name: ctg_l50
    description: Given a set of contigs, the L50 is defined as the sequence length
      of the shortest contig at 50% of the total genome length.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_l90:
    name: ctg_l90
    description: The L90 statistic is less than or equal to the L50 statistic; it
      is the length for which the collection of all contigs of that length or longer
      contains at least 90% of the sum of the lengths of all contigs.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_logsum:
    name: ctg_logsum
    description: Maximum contig length.. Polymorphic subclass-specific slot (from
      'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_max:
    name: ctg_max
    description: Maximum contig length.. Polymorphic subclass-specific slot (from
      'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_n50:
    name: ctg_n50
    description: Given a set of contigs, each with its own length, the N50 count is
      defined as the smallest number_of_contigs whose length sum makes up half of
      genome size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_n90:
    name: ctg_n90
    description: Given a set of contigs, each with its own length, the N90 count is
      defined as the smallest number of contigs whose length sum makes up 90% of genome
      size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  ctg_powsum:
    name: ctg_powsum
    description: Powersum of all contigs is the same as logsum except that it uses
      the sum of (length*(length^P)) for some power P (default P=0.25).. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  end_date:
    name: end_date
    description: The date on which any process or activity was ended
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  ended_at_time:
    name: ended_at_time
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  execution_resource:
    name: execution_resource
    description: The computing resource or facility where the workflow was executed.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: ExecutionResourceEnum
    multivalued: false
  gap_pct:
    name: gap_pct
    description: The gap size percentage of all scaffolds.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  gc_avg:
    name: gc_avg
    description: Average of GC content of all contigs.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  gc_std:
    name: gc_std
    description: Standard deviation of GC content of all contigs.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  git_url:
    name: git_url
    description: The url that points to the exact software repository location used
      to run a workflow
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: string
    required: true
    multivalued: false
  gold_analysis_project_identifiers:
    name: gold_analysis_project_identifiers
    description: identifiers for corresponding analysis projects in GOLD. Polymorphic
      subclass-specific slot (from 'MetagenomeAnnotation').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: external_identifier
    required: false
    multivalued: true
  has_input:
    name: has_input
    description: An input to a process. Reference by identifier; original range was
      class 'DataObject'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_input
    - DataGenerationFlat
    - data_generation_set_has_input
    - MaterialProcessingFlat
    - material_processing_set_has_input
    - StorageProcessFlat
    - storage_process_set_has_input
    - WorkflowExecutionFlat
    - workflow_execution_set_has_input
    range: string
    required: true
    multivalued: true
  has_output:
    name: has_output
    description: An output from a process. Reference by identifier; original range
      was class 'DataObject'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_output
    - DataGenerationFlat
    - data_generation_set_has_output
    - MaterialProcessingFlat
    - material_processing_set_has_output
    - StorageProcessFlat
    - storage_process_set_has_output
    - WorkflowExecutionFlat
    - workflow_execution_set_has_output
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    owner: WorkflowExecutionFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  img_identifiers:
    name: img_identifiers
    description: A list of identifiers that relate the biosample to records in the
      IMG database.. Polymorphic subclass-specific slot (from 'MetatranscriptomeExpressionAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - BiosampleFlat
    - WorkflowExecutionFlat
    range: external_identifier
    required: false
    multivalued: true
  input_base_count:
    name: input_base_count
    description: The nucleotide base count number of input reads for QC analysis..
      Polymorphic subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  input_contig_num:
    name: input_contig_num
    description: Total number of input contigs.. Polymorphic subclass-specific slot
      (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  input_read_bases:
    name: input_read_bases
    description: TODO      . Polymorphic subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  input_read_count:
    name: input_read_count
    description: The sequence count number of input reads for QC analysis.. Polymorphic
      subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  insdc_assembly_identifiers:
    name: insdc_assembly_identifiers
    description: Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: external_identifier
    required: false
    multivalued: true
  low_depth_contig_num:
    name: low_depth_contig_num
    description: Number of contigs which were excluded from binning for depth of coverage..
      Polymorphic subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  mean_peptide_count:
    name: mean_peptide_count
    description: The average number of peptides per protein identified in the metaproteomics
      analysis.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  metabolomics_analysis_category:
    name: metabolomics_analysis_category
    description: The category of metabolomics analysis being performed.. Polymorphic
      subclass-specific slot (from 'MetabolomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: MetabolomicsAnalysisCategoryEnum
    required: false
    multivalued: false
  metaproteomics_analysis_category:
    name: metaproteomics_analysis_category
    description: The category of metaproteomics analysis being performed.. Polymorphic
      subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: MetaproteomicsAnalysisCategoryEnum
    required: false
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  num_aligned_reads:
    name: num_aligned_reads
    description: The sequence count number of input reads aligned to assembled contigs..
      Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  num_input_reads:
    name: num_input_reads
    description: The sequence count number of input reads for assembly.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  output_base_count:
    name: output_base_count
    description: After QC analysis nucleotide base count number.. Polymorphic subclass-specific
      slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  output_read_bases:
    name: output_read_bases
    description: TODO. Polymorphic subclass-specific slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  output_read_count:
    name: output_read_count
    description: After QC analysis sequence count number.. Polymorphic subclass-specific
      slot (from 'ReadQcAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  peak_assignment_count:
    name: peak_assignment_count
    description: 'The total number of two dimensional mass to charge (m/z) : retention
      time features with associated metabolite identification in the metabolomics
      or lipidomics analysis.. Polymorphic subclass-specific slot (from ''MetabolomicsAnalysis'').'
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  peak_count:
    name: peak_count
    description: 'The total number of two dimensional mass to charge (m/z) : retention
      time features detected in the metabolomics analysis.. Polymorphic subclass-specific
      slot (from ''MetabolomicsAnalysis'').'
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  peptide_to_spectrum_match_count:
    name: peptide_to_spectrum_match_count
    description: Total number of MS2 spectra with a false discovery rate passing peptide
      match.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_maximum_numeric_value:
    name: peptide_to_spectrum_match_rate_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'peptide_to_spectrum_match_rate.has_maximum_numeric_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: decimal
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_minimum_numeric_value:
    name: peptide_to_spectrum_match_rate_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'peptide_to_spectrum_match_rate.has_minimum_numeric_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: decimal
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_numeric_value:
    name: peptide_to_spectrum_match_rate_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'peptide_to_spectrum_match_rate.has_numeric_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: decimal
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_raw_value:
    name: peptide_to_spectrum_match_rate_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'peptide_to_spectrum_match_rate.has_raw_value'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  peptide_to_spectrum_match_rate_has_unit:
    name: peptide_to_spectrum_match_rate_has_unit
    description: The unit of the quantity Flattened from nested slot 'peptide_to_spectrum_match_rate.has_unit'..
      Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: UnitEnum
    required: false
    multivalued: false
  processing_institution:
    name: processing_institution
    description: The organization that processed the sample.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProcessingInstitutionEnum
    required: true
    multivalued: false
  processing_institution_workflow_metadata:
    name: processing_institution_workflow_metadata
    description: Information about how workflow results were generated when the processing
      is done by an external organziation (e.g., JGI) such as software tool name and
      version or pipeline name and version.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  qc_comment:
    name: qc_comment
    description: Slot to store additional comments about laboratory or workflow output.
      For workflow output it may describe the particular workflow stage that failed.
      (ie Failed at call-stage due to a malformed fastq file).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  qc_status:
    name: qc_status
    description: Stores information about the result of a process (ie the process
      of sequencing a library may have for qc_status of 'fail' if not enough data
      was generated)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: StatusEnum
    multivalued: false
  razor_protein_count:
    name: razor_protein_count
    description: The minimal protein set that describes the unique peptide sequences
      identified after applying Razor Protein parsimony.. Polymorphic subclass-specific
      slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  scaf_bp:
    name: scaf_bp
    description: Total size in bp of all scaffolds.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_l50:
    name: scaf_l50
    description: Given a set of scaffolds, the L50 is defined as the sequence length
      of the shortest scaffold at 50% of the total genome length.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_l90:
    name: scaf_l90
    description: The L90 statistic is less than or equal to the L50 statistic; it
      is the length for which the collection of all scaffolds of that length or longer
      contains at least 90% of the sum of the lengths of all scaffolds.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_l_gt50k:
    name: scaf_l_gt50k
    description: Total size in bp of all scaffolds greater than 50 KB.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_logsum:
    name: scaf_logsum
    description: The sum of the (length*log(length)) of all scaffolds, times some
      constant.  Increase the contiguity, the score will increase. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_max:
    name: scaf_max
    description: Maximum scaffold length.. Polymorphic subclass-specific slot (from
      'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_n50:
    name: scaf_n50
    description: Given a set of scaffolds, each with its own length, the N50 count
      is defined as the smallest number of scaffolds whose length sum makes up half
      of genome size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_n90:
    name: scaf_n90
    description: Given a set of scaffolds, each with its own length, the N90 count
      is defined as the smallest number of scaffolds whose length sum makes up 90%
      of genome size.. Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_n_gt50k:
    name: scaf_n_gt50k
    description: Total sequence count of scaffolds greater than 50 KB.. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_pct_gt50k:
    name: scaf_pct_gt50k
    description: Total sequence size percentage of scaffolds greater than 50 KB..
      Polymorphic subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaf_powsum:
    name: scaf_powsum
    description: Powersum of all scaffolds is the same as logsum except that it uses
      the sum of (length*(length^P)) for some power P (default P=0.25).. Polymorphic
      subclass-specific slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  scaffolds:
    name: scaffolds
    description: Total sequence count of all scaffolds.. Polymorphic subclass-specific
      slot (from 'MetagenomeAssembly').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: float
    required: false
    multivalued: false
  start_date:
    name: start_date
    description: The date on which any process or activity was started
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  started_at_time:
    name: started_at_time
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: string
    required: true
    multivalued: false
  superseded_by:
    name: superseded_by
    description: Links a DataObject or WorkflowExecution record to a newer WorkflowExecution
      that  supersedes it, marking this record as outdated. The linked WorkflowExecution
      or resultant DataObjects should be used in favor of this record. Reference by
      identifier; original range was class 'WorkflowExecution'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - DataObjectFlat
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  too_short_contig_num:
    name: too_short_contig_num
    description: Number of contigs which were excluded from binning for length.. Polymorphic
      subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  total_protein_count:
    name: total_protein_count
    description: The total number of distinct proteins identified in the metaproteomics
      analysis.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: WorkflowExecutionFlat
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  unbinned_contig_num:
    name: unbinned_contig_num
    description: Number of contigs which did not end up in a medium or high quality
      bin.. Polymorphic subclass-specific slot (from 'MagsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  unique_peptide_seq_count:
    name: unique_peptide_seq_count
    description: The number of distinct peptide sequences identified in the LC-MS/MS
      file.. Polymorphic subclass-specific slot (from 'MetaproteomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: integer
    required: false
    multivalued: false
  uses_calibration:
    name: uses_calibration
    description: calibration information is used by a process Reference by identifier;
      original range was class 'CalibrationInformation'.. Polymorphic subclass-specific
      slot (from 'MetabolomicsAnalysis').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    - workflow_execution_set_uses_calibration
    range: string
    required: false
    multivalued: true
  version:
    name: version
    description: The NMDC release tag for a given workflow release used for data processing.
      If workflows are processed externally, as denoted by processing_institution,
      this value represents the best mapping between a processing institution's (e.g.,
      JGI) workflow metadata and a NMDC tagged release.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  was_informed_by:
    name: was_informed_by
    description: The primary DataGeneration subclass that the WorkflowExecution subclass
      depends on. Reference by identifier; original range was class 'DataGeneration'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: WorkflowExecutionFlat
    domain_of:
    - WorkflowExecutionFlat
    - workflow_execution_set_was_informed_by
    range: string
    required: true
    multivalued: true