Enum: AnalysisTypeEnum

Permissible Values

Value	Meaning	Description
metabolomics	None	Mass spectrometry-based analysis of metabolites.
lipidomics	None	Mass spectrometry-based analysis of lipids.
metagenomics	None	Standard short-read metagenomic sequencing
metagenomics_long_read	None	Long-read metagenomic sequencing
metaproteomics	None	Mass spectrometry-based analysis of proteins from a mixed community.
metatranscriptomics	None	Short-read metatranscriptomic sequencing of RNA from a mixed community.
natural organic matter	None	Analysis of natural organic matter (NOM), such as by Fourier-transform ion...
bulk chemistry	None	Analysis of bulk chemical properties of a sample, such as pH, conductivity,...
amplicon sequencing assay	OBI:0002767
isolate genome sequencing	None	Sequencing of DNA from an isolated organism, such as a pure culture.
isolate transcriptome sequencing	None	Sequencing of RNA from an isolated organism, such as a pure culture.
proteomics	None	Mass spectrometry-based analysis of proteins from a single organism.
molecular structure	None	Analysis of the configuration and arrangement of atoms within molecules of a sample.
chemical speciation mapping	None	Identification and/or measurement of specific forms (isotopes, redox state,...
isotope profiling	None	Measurement of stable isotope ratios in a sample, typically for hydrogen,...
imaging - xray	None	A technique that uses X-rays to generate an image of a sample based on how...
imaging - electron	None	A microscopy technique that uses beams of electrons to scan a sample and...
imaging - ion	None	A microscopy technique that uses ions to scan a sample and generate images.
imaging - light	None	A microscopy technique that uses visible light to generate images of a sample.
hydraulic properties	None	Measurement of the relative permeability-saturation-capillary pressure...
other emsl analyses	None	Other analyses planned at EMSL that are not listed here.

Slots

Name	Description
analysis_type	Select all the data types associated or available for this biosample

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

LinkML Source

name: AnalysisTypeEnum
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
permissible_values:
  metabolomics:
    text: metabolomics
    description: Mass spectrometry-based analysis of metabolites.
  lipidomics:
    text: lipidomics
    description: Mass spectrometry-based analysis of lipids.
  metagenomics:
    text: metagenomics
    description: Standard short-read metagenomic sequencing
    title: Metagenomics
  metagenomics_long_read:
    text: metagenomics_long_read
    description: Long-read metagenomic sequencing
    title: Metagenomics (long read)
  metaproteomics:
    text: metaproteomics
    description: Mass spectrometry-based analysis of proteins from a mixed community.
  metatranscriptomics:
    text: metatranscriptomics
    description: Short-read metatranscriptomic sequencing of RNA from a mixed community.
  natural organic matter:
    text: natural organic matter
    description: Analysis of natural organic matter (NOM), such as by Fourier-transform
      ion cyclotron resonance mass spectrometry (FTICR-MS).
  bulk chemistry:
    text: bulk chemistry
    description: Analysis of bulk chemical properties of a sample, such as pH, conductivity,
      total carbon, total nitrogen, etc.
  amplicon sequencing assay:
    text: amplicon sequencing assay
    meaning: OBI:0002767
    title: Amplicon sequencing assay
  isolate genome sequencing:
    text: isolate genome sequencing
    description: Sequencing of DNA from an isolated organism, such as a pure culture.
    title: Isolate genome sequencing
    broad_mappings:
    - OBI:0002117
  isolate transcriptome sequencing:
    text: isolate transcriptome sequencing
    description: Sequencing of RNA from an isolated organism, such as a pure culture.
    title: Isolate transcriptome sequencing
    broad_mappings:
    - OBI:0001177
  proteomics:
    text: proteomics
    description: Mass spectrometry-based analysis of proteins from a single organism.
  molecular structure:
    text: molecular structure
    description: Analysis of the configuration and arrangement of atoms within molecules
      of a sample.
  chemical speciation mapping:
    text: chemical speciation mapping
    description: Identification and/or measurement of specific forms (isotopes, redox
      state, molecular structure, etc.) of one or more elements in a sample.
  isotope profiling:
    text: isotope profiling
    description: Measurement of stable isotope ratios in a sample, typically for hydrogen,
      carbon, nitrogen, or oxygen.
  imaging - xray:
    text: imaging - xray
    description: A technique that uses X-rays to generate an image of a sample based
      on how strongly the different components absorb X-rays. Resulting images may
      be assembled into a 3D computer model.
  imaging - electron:
    text: imaging - electron
    description: A microscopy technique that uses beams of electrons to scan a sample
      and generate images.
  imaging - ion:
    text: imaging - ion
    description: A microscopy technique that uses ions to scan a sample and generate
      images.
  imaging - light:
    text: imaging - light
    description: A microscopy technique that uses visible light to generate images
      of a sample.
  hydraulic properties:
    text: hydraulic properties
    description: Measurement of the relative permeability-saturation-capillary pressure
      (k-s-p) relations of a sample.
  other emsl analyses:
    text: other emsl analyses
    description: Other analyses planned at EMSL that are not listed here.