Enum: FailureWhereEnum

The permitted values for describing where in the process, either a lab or analysis workflow step, the failure occurred.

URI: FailureWhereEnum

Permissible Values

Value	Meaning	Description
OmicsProcessing	None	A failure has occurred in omics processing, a lab process
Pooling	None	A failure has occurred in pooling, a lab process
Extraction	None	A failure has occurred in extraction, a lab process
LibraryPreparation	None	A failure has occurred in library preparation, a lab process
MetagenomeAssembly	None	A failure has occurred in metagenome assembly, a workflow process
MetatranscriptomeActivity	None	A failure has occurred in metatranscriptome analysis, a workflow process
MagsAnalysisActivity	None	A failure has occurred in binning, a workflow process to generate metagenome-...
ReadQcAnalysisActivity	None	A failure has occurred in read qc, a workflow process
ReadBasedTaxonomyAnalysisActivity	None	A failure has occurred in reads based taxonomy, a workflow process
MetagenomeAnnotationActivity	None	A failure has occurred in annotation, a workflow process

Slots

Name	Description
qc_failure_where	Describes the nmdc schema class that corresonds to where the failure occurred

Comments

• At Chris' recommendation permissible values for this enumeration are the same as Class names.

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

LinkML Source

name: FailureWhereEnum
description: The permitted values for describing where in the process, either a lab
  or analysis workflow step, the failure occurred.
comments:
- At Chris' recommendation permissible values for this enumeration are the same as
  Class names.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
permissible_values:
  OmicsProcessing:
    text: OmicsProcessing
    description: A failure has occurred in omics processing, a lab process.
  Pooling:
    text: Pooling
    description: A failure has occurred in pooling, a lab process.
  Extraction:
    text: Extraction
    description: A failure has occurred in extraction, a lab process.
  LibraryPreparation:
    text: LibraryPreparation
    description: A failure has occurred in library preparation, a lab process.
  MetagenomeAssembly:
    text: MetagenomeAssembly
    description: A failure has occurred in metagenome assembly, a workflow process.
  MetatranscriptomeActivity:
    text: MetatranscriptomeActivity
    description: A failure has occurred in metatranscriptome analysis, a workflow
      process.
  MagsAnalysisActivity:
    text: MagsAnalysisActivity
    description: A failure has occurred in binning, a workflow process to generate
      metagenome-assembled genomes (MAGS).
  ReadQcAnalysisActivity:
    text: ReadQcAnalysisActivity
    description: A failure has occurred in read qc, a workflow process.
  ReadBasedTaxonomyAnalysisActivity:
    text: ReadBasedTaxonomyAnalysisActivity
    description: A failure has occurred in reads based taxonomy, a workflow process.
  MetagenomeAnnotationActivity:
    text: MetagenomeAnnotationActivity
    description: A failure has occurred in annotation, a workflow process.