Subset: HostInformation
Biosample slots describing the host organism a sample was taken from or associated with: host taxonomy, anatomy, physiology, life stage, and condition. A Biosample populating at least badge_minimum_slots of these is awarded the host_information badge.
URI: HostInformation
Comments
- Many NMDC biosamples have no host, so an absent host_information badge means the slots are unpopulated, not that the sample is deficient. The data portal shows only badges a sample has earned.
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| badge_minimum_slots | 2 |
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Member of: BadgeTopic
Slots in subset
| Slot | Description |
|---|---|
| ances_data | Information about either pedigree or other ancestral information description... |
| biotic_relationship | Description of relationship(s) between the subject organism and other... |
| gravidity | Whether or not subject is gravid, and if yes date due or date... |
| host_age | Age of host at the time of sampling; relevant scale depends on species and... |
| host_body_habitat | Original body habitat where the sample was obtained from |
| host_body_product | Substance produced by the body, e.g. Stool, mucus, where the sample was... |
| host_body_site | Name of body site where the sample was obtained from, such as a specific... |
| host_body_temp | Core body temperature of the host when sample was collected |
| host_color | The color of host |
| host_common_name | Common name of the host |
| host_diet | Type of diet depending on the host, for animals omnivore, herbivore etc.,... |
| host_disease_stat | List of diseases with which the host has been diagnosed; can include... |
| host_dry_mass | Measurement of dry mass |
| host_family_relation | Familial relationships to other hosts in the same study; can include... |
| host_genotype | Observed genotype |
| host_genus | Genus of the host organism that the sample was collected from. |
| host_growth_cond | Literature reference giving growth conditions of the host |
| host_height | The height of subject |
| host_last_meal | Content of last meal and time since feeding; can include multiple values |
| host_length | The length of subject |
| host_life_stage | Description of life stage of host |
| host_name | |
| host_phenotype | Phenotype of human or other host. Use terms from the phenotypic quality... |
| host_sex | Gender or physical sex of the host |
| host_shape | Morphological shape of host |
| host_species | Species of the host organism that the sample was collected from. |
| host_strain | Strain of the host organism that the sample was collected from. |
| host_subject_id | A unique identifier by which each subject can be referred to, de-identified |
| host_subspecf_genlin | Information about the genetic distinctness of the host organism below the... |
| host_substrate | The growth substrate of the host |
| host_symbiont | The taxonomic name of the organism(s) found living in mutualistic,... |
| host_taxid | NCBI taxon id of the host, e.g. 9606 |
| host_tot_mass | Total mass of the host at collection, the unit depends on host |
| host_wet_mass | Measurement of wet mass |
| plant_product | Substance produced by the plant, where the sample was obtained from |
| plant_sex | Sex of the reproductive parts on the whole plant, e.g. pistillate,... |
| plant_struc | Name of plant structure the sample was obtained from; for Plant Ontology... |