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Enum: LibrarySourceEnum

Molecular source of the sequencing library

URI: LibrarySourceEnum

Permissible Values

Value Meaning Description
GENOMIC None Genomic DNA (includes PCR products from genomic DNA)
TRANSCRIPTOMIC None Transcription products or non-genomic DNA
METAGENOMIC None Mixed material from metagenome
METATRANSCRIPTOMIC None Transcription products from community targets
SYNTHETIC None Synthetic DNA
VIRAL RNA None Viral RNA
GENOMIC SINGLE CELL None Single cell genomic DNA source
TRANSCRIPTOMIC SINGLE CELL None Single cell transcriptomic source
OTHER None Other, unspecified, or unknown library source material

Slots

Name Description
library_source The molecular source of the sequencing library

See Also

Identifier and Mapping Information

Schema Source

LinkML Source

name: LibrarySourceEnum
description: Molecular source of the sequencing library
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/enasequence/webin-xml/blob/2.1.0/src/main/resources/uk/ac/ebi/ena/sra/schema/SRA.experiment.xsd
rank: 1000
permissible_values:
  GENOMIC:
    text: GENOMIC
    description: Genomic DNA (includes PCR products from genomic DNA)
  TRANSCRIPTOMIC:
    text: TRANSCRIPTOMIC
    description: Transcription products or non-genomic DNA
    comments:
    - for example EST cDNA, RT-PCR, or screened libraries
  METAGENOMIC:
    text: METAGENOMIC
    description: Mixed material from metagenome
  METATRANSCRIPTOMIC:
    text: METATRANSCRIPTOMIC
    description: Transcription products from community targets
  SYNTHETIC:
    text: SYNTHETIC
    description: Synthetic DNA
  VIRAL RNA:
    text: VIRAL RNA
    description: Viral RNA
  GENOMIC SINGLE CELL:
    text: GENOMIC SINGLE CELL
    description: Single cell genomic DNA source
  TRANSCRIPTOMIC SINGLE CELL:
    text: TRANSCRIPTOMIC SINGLE CELL
    description: Single cell transcriptomic source
  OTHER:
    text: OTHER
    description: 'Other, unspecified, or unknown library source material '