Class: Organization

A social or legal institution such as a company, society, consortium, etc.

classDiagram class Organization click Organization href "../Organization" Agent <|-- Organization click Agent href "../Agent" Organization : name Organization : profile_image_url Organization : ror Organization : type Organization : websites

Inheritance

Agent
- Organization

Slots

Name	Cardinality and Range	Description	Inheritance
ror	0..1 String	The Research Organization Registry identifier of an organization.	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	Agent
name	1 String	The name of the organization.	Agent
profile_image_url	0..1 String	A url that points to an image of this person or organization.	Agent
websites	* String	A list of websites that are associated with the entity.	Agent

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
exact	prov:Organization
close	dcm:Organization

LinkML Source

Direct

name: Organization
description: A social or legal institution such as a company, society, consortium,
  etc.
from_schema: https://w3id.org/nmdc/nmdc
exact_mappings:
- prov:Organization
close_mappings:
- dcm:Organization
is_a: Agent
slots:
- ror
slot_usage:
  name:
    name: name
    description: The name of the organization.
    close_mappings:
    - dcm:organization_name
class_uri: nmdc:Organization

Induced

name: Organization
description: A social or legal institution such as a company, society, consortium,
  etc.
from_schema: https://w3id.org/nmdc/nmdc
exact_mappings:
- prov:Organization
close_mappings:
- dcm:Organization
is_a: Agent
slot_usage:
  name:
    name: name
    description: The name of the organization.
    close_mappings:
    - dcm:organization_name
attributes:
  ror:
    name: ror
    description: The Research Organization Registry identifier of an organization.
    comments:
    - Canonical form is the Bioregistry CURIE with prefix `ror`.
    - Optional. Institutions usually have a ROR; many consortia do not.
    examples:
    - value: ror:05cwx3318
      description: National Microbiome Data Collaborative
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - https://bioregistry.io/registry/ror
    - https://ror.org
    close_mappings:
    - dcm:organization_id
    rank: 1000
    owner: Organization
    domain_of:
    - Organization
    range: string
    pattern: ^ror:0[a-hj-km-np-tv-z0-9]{6}[0-9]{2}$
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    comments:
    - 'Deprecating this slot was proposed and rejected: without it, a document read
      back from a polymorphic MongoDB collection cannot be resolved to the class it
      instantiates. It is required on every class for that reason, rather than as
      a convention inherited from LinkML.'
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://w3id.org/nmdc/nmdc
    structured_aliases:
    - literal_form: workflow_execution_class
      predicate: NARROW_SYNONYM
      contexts:
      - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    owner: Organization
    domain_of:
    - Agent
    - EukEval
    - FunctionalAnnotationAggMember
    - PeptideQuantification
    - ProteinQuantification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - OntologyRelation
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    - ProvenanceMetadata
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    range: uriorcurie
    required: true
  name:
    name: name
    description: The name of the organization.
    from_schema: https://w3id.org/nmdc/nmdc
    close_mappings:
    - dcm:organization_name
    rank: 1000
    owner: Organization
    domain_of:
    - Agent
    - NamedThing
    - Protocol
    range: string
    required: true
  profile_image_url:
    name: profile_image_url
    description: A url that points to an image of this person or organization.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    owner: Organization
    domain_of:
    - Agent
    range: string
  websites:
    name: websites
    description: A list of websites that are associated with the entity.
    comments:
    - DOIs should not be included as websites. Instead, use the associated_dois slot.
    - A consortium's homepage website should be included in the homepage_website slot,
      not in websites.
    - consortium is a convenience term for a Study whose study_category value is consortium
    - the website slot and its subproperties are virtually identical to the url slot,
      except that they are multivalued and url is single-valued.
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - nmdc:url
    rank: 1000
    owner: Organization
    domain_of:
    - Agent
    - Study
    range: string
    multivalued: true
    pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$
class_uri: nmdc:Organization