Skip to content

Slot: name

A human readable label for an entity

URI: nmdc:name

Applicable Classes

Name Description Modifies Slot
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
NamedThing a databased entity or concept/class no
Sample A sample is a material entity that can be characterized by an experiment no
WorkflowExecution Represents an instance of an execution of a particular workflow no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
Extraction A material separation in which a desired component of an input material is se... no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
OrganismSample A material sample in which all cells are expected to share the same genome no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
CalibrationInformation A calibration object that is associated with a process no
LibraryPreparation no
Culturing A material processing that grows an organism under controlled conditions no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
EnvironmentalMaterialTerm no
FiltrationProcess The process of segregation of phases; e no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
CollectingBiosamplesFromSite no
MetaproteomicsAnalysis no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
MaterialEntity A named thing that occupies space and has mass no
Configuration A set of parameters that define the actions of a process and is shared among ... no
Isolation A material processing that separates an organism from a mixed sample by selec... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
Site no
Instrument A material entity that is designed to perform a function in a scientific inve... no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
Protocol no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
OntologyClass A representation of class defined in an external ontology no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
Organism A material entity that is a living or once-living individual no
DataObject An object that primarily consists of symbols that represent information yes
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... yes
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
NomAnalysis no
Biosample Biological source material which can be characterized by an experiment yes
MetabolomicsAnalysis no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
Pooling physical combination of several instances of like material no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
GeneProduct A molecule encoded by a gene that has an evolved function no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
DataEmitterProcess A process that generates data objects as output no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... yes
ProtocolExecution A PlannedProces that has PlannedProcess parts no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
PersonValue An attribute value representing a person yes
NcbiTaxon A taxonomy term from NCBI Taxonomy no
MetatranscriptomeAssembly no
PlannedProcess A named thing that is executed according to a plan no
MetatranscriptomeAnnotation no
ProcessedSample no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no

Properties

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: name
description: A human readable label for an entity
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: name
domain_of:
- PersonValue
- NamedThing
- Protocol
range: string