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Slot: environment adjacent to site (adjacent_environment)

Description of the environmental system or features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes

URI: MIXS:0001121

Applicable Classes

Name Description Modifies Slot
Biosample Biological source material which can be characterized by an experiment. no

Properties

Examples

type: "nmdc:ControlledTermValue"
has_raw_value: "estuarine biome [ENVO:01000020]"
term:
  type: "nmdc:OntologyClass"
  id: "ENVO:01000020"
  name: "estuarine biome"

See Also

Identifier and Mapping Information

Annotations

property value
Expected_value ENVO_01001110 or ENVO_00000070

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0001121
close GENEPIO:0101205, NCBI_BIOSAMPLE_ATTRIBUTE:adjacent_environment

LinkML Source

name: adjacent_environment
annotations:
  Expected_value:
    tag: Expected_value
    value: ENVO_01001110 or ENVO_00000070
description: Description of the environmental system or features that are adjacent
  to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110)
  and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple
  terms can be separated by pipes
title: environment adjacent to site
notes:
- 'PHA4GE Wastewater Contextual Data Specification 4.4.4: close match to proximal
  environmental site (GENEPIO:0101205); the PHA4GE field is restricted to its environmental
  site picklist, this slot accepts any ENVO ecosystem or human construction term.'
- 'NCBI BioSample: close match to the adjacent_environment attribute of the PHA4GE.wwsurv.1.0
  package, the NCBI harmonized name for this MIxS term.'
examples:
- object:
    type: nmdc:ControlledTermValue
    has_raw_value: estuarine biome [ENVO:01000020]
    term:
      type: nmdc:OntologyClass
      id: ENVO:01000020
      name: estuarine biome
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/pha4ge/wastewater-contextual-data-specification/releases/tag/v4.4.4
- https://github.com/cidgoh/pathogen-genomics-package/blob/PGPv5.6.5/templates/wastewater/schema.yaml
close_mappings:
- GENEPIO:0101205
- NCBI_BIOSAMPLE_ATTRIBUTE:adjacent_environment
rank: 1000
keywords:
- adjacent
- environment
- site
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0001121
domain_of:
- Biosample
range: ControlledTermValue
multivalued: true
inlined: true
inlined_as_list: true