Class: ControlledTermValue

A controlled term or class from an ontology

classDiagram class ControlledTermValue click ControlledTermValue href "../ControlledTermValue" AttributeValue <|-- ControlledTermValue click AttributeValue href "../AttributeValue" ControlledTermValue <|-- ControlledIdentifiedTermValue click ControlledIdentifiedTermValue href "../ControlledIdentifiedTermValue" ControlledTermValue : has_raw_value ControlledTermValue : term ControlledTermValue --> "1" OntologyClass : term click OntologyClass href "../OntologyClass" ControlledTermValue : was_generated_by ControlledTermValue --> "1" Activity : was_generated_by click Activity href "../Activity"

Inheritance

AttributeValue
- ControlledTermValue
  - ControlledIdentifiedTermValue

Slots

Name	Cardinality and Range	Description	Inheritance
term	0..1 OntologyClass	pointer to an ontology class	direct
has_raw_value	0..1 String	The value that was specified for an annotation in raw form, i	AttributeValue
was_generated_by	0..1 Activity		AttributeValue

Usages

used by	used in	type	used
Biosample	chem_administration	range	ControlledTermValue
Biosample	experimental_factor	range	ControlledTermValue
Biosample	growth_facil	range	ControlledTermValue
Biosample	host_body_product	range	ControlledTermValue
Biosample	host_body_site	range	ControlledTermValue
Biosample	host_phenotype	range	ControlledTermValue
Biosample	plant_growth_med	range	ControlledTermValue
Biosample	plant_struc	range	ControlledTermValue
Biosample	samp_mat_process	range	ControlledTermValue
OmicsProcessing	omics_type	range	ControlledTermValue
ControlledTermValue	term	domain	ControlledTermValue
ControlledIdentifiedTermValue	term	domain	ControlledTermValue

TODOs

add fields for ontology, branch

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:ControlledTermValue
native	nmdc:ControlledTermValue

LinkML Source

Direct

name: ControlledTermValue
description: A controlled term or class from an ontology
todos:
- add fields for ontology, branch
from_schema: https://w3id.org/nmdc/nmdc
is_a: AttributeValue
slots:
- term

Induced

name: ControlledTermValue
description: A controlled term or class from an ontology
todos:
- add fields for ontology, branch
from_schema: https://w3id.org/nmdc/nmdc
is_a: AttributeValue
attributes:
  term:
    name: term
    description: pointer to an ontology class
    notes:
    - 'removed ''slot_uri: rdf:type'''
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    domain: ControlledTermValue
    alias: term
    owner: ControlledTermValue
    domain_of:
    - ControlledTermValue
    range: OntologyClass
    inlined: true
  has_raw_value:
    name: has_raw_value
    description: The value that was specified for an annotation in raw form, i.e.
      a string. E.g. "2 cm" or "2-4 cm"
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    domain: AttributeValue
    multivalued: false
    alias: has_raw_value
    owner: ControlledTermValue
    domain_of:
    - AttributeValue
    - QuantityValue
    range: string
  was_generated_by:
    name: was_generated_by
    from_schema: https://w3id.org/nmdc/nmdc
    mappings:
    - prov:wasGeneratedBy
    rank: 1000
    alias: was_generated_by
    owner: ControlledTermValue
    domain_of:
    - DataObject
    - AttributeValue
    - FunctionalAnnotation
    range: Activity