Class: ControlledIdentifiedTermValue

A controlled term or class from an ontology, requiring the presence of term with an id

classDiagram class ControlledIdentifiedTermValue click ControlledIdentifiedTermValue href "../ControlledIdentifiedTermValue" ControlledTermValue <|-- ControlledIdentifiedTermValue click ControlledTermValue href "../ControlledTermValue" ControlledIdentifiedTermValue : has_raw_value ControlledIdentifiedTermValue : term ControlledIdentifiedTermValue --> "1" OntologyClass : term click OntologyClass href "../OntologyClass" ControlledIdentifiedTermValue : was_generated_by ControlledIdentifiedTermValue --> "1" Activity : was_generated_by click Activity href "../Activity"

Inheritance

AttributeValue
- ControlledTermValue
  - ControlledIdentifiedTermValue

Slots

Name	Cardinality and Range	Description	Inheritance
term	1..1 OntologyClass	pointer to an ontology class	ControlledTermValue
has_raw_value	0..1 String	The value that was specified for an annotation in raw form, i	AttributeValue
was_generated_by	0..1 Activity		AttributeValue

Usages

used by	used in	type	used
Biosample	host_taxid	range	ControlledIdentifiedTermValue
Biosample	env_broad_scale	range	ControlledIdentifiedTermValue
Biosample	env_local_scale	range	ControlledIdentifiedTermValue
Biosample	env_medium	range	ControlledIdentifiedTermValue
Biosample	samp_taxon_id	range	ControlledIdentifiedTermValue

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:ControlledIdentifiedTermValue
native	nmdc:ControlledIdentifiedTermValue

LinkML Source

Direct

name: ControlledIdentifiedTermValue
description: A controlled term or class from an ontology, requiring the presence of
  term with an id
notes:
- To be used for slots like env_broad_scale
from_schema: https://w3id.org/nmdc/nmdc
is_a: ControlledTermValue
slot_usage:
  term:
    name: term
    domain_of:
    - ControlledTermValue
    required: true

Induced

name: ControlledIdentifiedTermValue
description: A controlled term or class from an ontology, requiring the presence of
  term with an id
notes:
- To be used for slots like env_broad_scale
from_schema: https://w3id.org/nmdc/nmdc
is_a: ControlledTermValue
slot_usage:
  term:
    name: term
    domain_of:
    - ControlledTermValue
    required: true
attributes:
  term:
    name: term
    description: pointer to an ontology class
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    domain: ControlledTermValue
    alias: term
    owner: ControlledIdentifiedTermValue
    domain_of:
    - ControlledTermValue
    range: OntologyClass
    required: true
    inlined: true
  has_raw_value:
    name: has_raw_value
    description: The value that was specified for an annotation in raw form, i.e.
      a string. E.g. "2 cm" or "2-4 cm"
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    domain: AttributeValue
    multivalued: false
    alias: has_raw_value
    owner: ControlledIdentifiedTermValue
    domain_of:
    - AttributeValue
    - QuantityValue
    range: string
  was_generated_by:
    name: was_generated_by
    from_schema: https://w3id.org/nmdc/nmdc
    mappings:
    - prov:wasGeneratedBy
    rank: 1000
    alias: was_generated_by
    owner: ControlledIdentifiedTermValue
    domain_of:
    - DataObject
    - AttributeValue
    - FunctionalAnnotation
    range: Activity