Class: FunctionalAnnotationTerm
Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex).
Note
This is an abstract class and should not be instantiated directly.
URI: nmdc:FunctionalAnnotationTerm
classDiagram
class FunctionalAnnotationTerm
OntologyClass <|-- FunctionalAnnotationTerm
FunctionalAnnotationTerm <|-- Pathway
FunctionalAnnotationTerm <|-- Reaction
FunctionalAnnotationTerm <|-- OrthologyGroup
FunctionalAnnotationTerm : alternative_identifiers
FunctionalAnnotationTerm : description
FunctionalAnnotationTerm : id
FunctionalAnnotationTerm : name
Inheritance
- NamedThing
- OntologyClass
- FunctionalAnnotationTerm
- OntologyClass
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
id | 1..1 Uriorcurie |
A unique identifier for a thing | NamedThing |
name | 0..1 String |
A human readable label for an entity | NamedThing |
description | 0..1 String |
a human-readable description of a thing | NamedThing |
alternative_identifiers | 0..* Uriorcurie |
A list of alternative identifiers for the entity | NamedThing |
Aliases
- function
- FunctionalAnnotation
TODOs
- decide if this should be used for product naming
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
Mapping Type | Mapped Value |
---|---|
self | nmdc:FunctionalAnnotationTerm |
native | nmdc:FunctionalAnnotationTerm |
LinkML Source
Direct
name: FunctionalAnnotationTerm
description: Abstract grouping class for any term/descriptor that can be applied to
a functional unit of a genome (protein, ncRNA, complex).
todos:
- decide if this should be used for product naming
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- function
- FunctionalAnnotation
is_a: OntologyClass
abstract: true
Induced
name: FunctionalAnnotationTerm
description: Abstract grouping class for any term/descriptor that can be applied to
a functional unit of a genome (protein, ncRNA, complex).
todos:
- decide if this should be used for product naming
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- function
- FunctionalAnnotation
is_a: OntologyClass
abstract: true
attributes:
id:
name: id
description: A unique identifier for a thing. Must be either a CURIE shorthand
for a URI or a complete URI
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
identifier: true
alias: id
owner: FunctionalAnnotationTerm
domain_of:
- Biosample
- Study
- NamedThing
- Activity
range: uriorcurie
required: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
name:
name: name
description: A human readable label for an entity
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: name
owner: FunctionalAnnotationTerm
domain_of:
- Protocol
- NamedThing
- PersonValue
- Activity
range: string
description:
name: description
description: a human-readable description of a thing
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
slot_uri: dcterms:description
alias: description
owner: FunctionalAnnotationTerm
domain_of:
- Study
- NamedThing
- ImageValue
range: string
alternative_identifiers:
name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
multivalued: true
alias: alternative_identifiers
owner: FunctionalAnnotationTerm
domain_of:
- Biosample
- Study
- NamedThing
- MetaboliteQuantification
range: uriorcurie
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$