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Class: FunctionalAnnotationTerm

Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex).

Note

This is an abstract class and should not be instantiated directly.

URI: nmdc:FunctionalAnnotationTerm

classDiagram class FunctionalAnnotationTerm OntologyClass <|-- FunctionalAnnotationTerm FunctionalAnnotationTerm <|-- Pathway FunctionalAnnotationTerm <|-- Reaction FunctionalAnnotationTerm <|-- OrthologyGroup FunctionalAnnotationTerm : alternative_identifiers FunctionalAnnotationTerm : description FunctionalAnnotationTerm : id FunctionalAnnotationTerm : name

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
Uriorcurie
A unique identifier for a thing NamedThing
name 0..1
String
A human readable label for an entity NamedThing
description 0..1
String
a human-readable description of a thing NamedThing
alternative_identifiers 0..*
Uriorcurie
A list of alternative identifiers for the entity NamedThing

Aliases

  • function
  • FunctionalAnnotation

TODOs

  • decide if this should be used for product naming

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc:FunctionalAnnotationTerm
native nmdc:FunctionalAnnotationTerm

LinkML Source

Direct

name: FunctionalAnnotationTerm
description: Abstract grouping class for any term/descriptor that can be applied to
  a functional unit of a genome (protein, ncRNA, complex).
todos:
- decide if this should be used for product naming
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- function
- FunctionalAnnotation
is_a: OntologyClass
abstract: true

Induced

name: FunctionalAnnotationTerm
description: Abstract grouping class for any term/descriptor that can be applied to
  a functional unit of a genome (protein, ncRNA, complex).
todos:
- decide if this should be used for product naming
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- function
- FunctionalAnnotation
is_a: OntologyClass
abstract: true
attributes:
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    identifier: true
    alias: id
    owner: FunctionalAnnotationTerm
    domain_of:
    - Biosample
    - Study
    - NamedThing
    - Activity
    range: uriorcurie
    required: true
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: name
    owner: FunctionalAnnotationTerm
    domain_of:
    - Protocol
    - NamedThing
    - PersonValue
    - Activity
    range: string
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: FunctionalAnnotationTerm
    domain_of:
    - Study
    - NamedThing
    - ImageValue
    range: string
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    multivalued: true
    alias: alternative_identifiers
    owner: FunctionalAnnotationTerm
    domain_of:
    - Biosample
    - Study
    - NamedThing
    - MetaboliteQuantification
    range: uriorcurie
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$