Class: NamedThing
a databased entity or concept/class
Note
This is an abstract class and should not be instantiated directly.
URI: nmdc:NamedThing
classDiagram
class NamedThing
click NamedThing href "../NamedThing"
NamedThing <|-- DataObject
click DataObject href "../DataObject"
NamedThing <|-- Study
click Study href "../Study"
NamedThing <|-- MaterialEntity
click MaterialEntity href "../MaterialEntity"
NamedThing <|-- PlannedProcess
click PlannedProcess href "../PlannedProcess"
NamedThing <|-- OntologyClass
click OntologyClass href "../OntologyClass"
NamedThing <|-- GeneProduct
click GeneProduct href "../GeneProduct"
NamedThing : alternative_identifiers
NamedThing : description
NamedThing : id
NamedThing : name
Inheritance
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| id | 1..1 Uriorcurie |
A unique identifier for a thing | direct |
| name | 0..1 String |
A human readable label for an entity | direct |
| description | 0..1 String |
a human-readable description of a thing | direct |
| alternative_identifiers | 0..* Uriorcurie |
A list of alternative identifiers for the entity | direct |
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc:NamedThing |
| native | nmdc:NamedThing |
LinkML Source
Direct
name: NamedThing
description: a databased entity or concept/class
from_schema: https://w3id.org/nmdc/nmdc
abstract: true
slots:
- id
- name
- description
- alternative_identifiers
Induced
name: NamedThing
description: a databased entity or concept/class
from_schema: https://w3id.org/nmdc/nmdc
abstract: true
attributes:
id:
name: id
description: A unique identifier for a thing. Must be either a CURIE shorthand
for a URI or a complete URI
notes:
- 'abstracted pattern: prefix:typecode-authshoulder-blade(.version)?(_seqsuffix)?'
- a minimum length of 3 characters is suggested for typecodes, but 1 or 2 characters
will be accepted
- typecodes must correspond 1:1 to a class in the NMDC schema. this will be checked
via per-class id slot usage assertions
- minting authority shoulders should probably be enumerated and checked in the
pattern
examples:
- value: nmdc:mgmag-00-x012.1_7_c1
description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
identifier: true
alias: id
owner: NamedThing
domain_of:
- Biosample
- Study
- NamedThing
- Activity
range: uriorcurie
required: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
name:
name: name
description: A human readable label for an entity
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: name
owner: NamedThing
domain_of:
- Protocol
- NamedThing
- PersonValue
- Activity
range: string
description:
name: description
description: a human-readable description of a thing
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
slot_uri: dcterms:description
alias: description
owner: NamedThing
domain_of:
- Study
- NamedThing
- ImageValue
range: string
alternative_identifiers:
name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
multivalued: true
alias: alternative_identifiers
owner: NamedThing
domain_of:
- Biosample
- Study
- NamedThing
- MetaboliteQuantification
range: uriorcurie
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$