Class: Material Entity (MaterialEntity)

Note

This is an abstract class and should not be instantiated directly.

classDiagram class MaterialEntity click MaterialEntity href "../MaterialEntity" NamedThing <|-- MaterialEntity click NamedThing href "../NamedThing" MaterialEntity <|-- Biosample click Biosample href "../Biosample" MaterialEntity <|-- ProcessedSample click ProcessedSample href "../ProcessedSample" MaterialEntity <|-- AnalyticalSample click AnalyticalSample href "../AnalyticalSample" MaterialEntity <|-- Site click Site href "../Site" MaterialEntity : alternative_identifiers MaterialEntity : description MaterialEntity : id MaterialEntity : name

Inheritance

NamedThing
- MaterialEntity

Slots

Name	Cardinality and Range	Description	Inheritance
id	1..1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human readable label for an entity	NamedThing
description	0..1 String	a human-readable description of a thing	NamedThing
alternative_identifiers	0..* Uriorcurie	A list of alternative identifiers for the entity	NamedThing

Aliases

Material
Physical entity

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:MaterialEntity
native	nmdc:MaterialEntity

LinkML Source

Direct

name: MaterialEntity
title: Material Entity
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- Material
- Physical entity
is_a: NamedThing
abstract: true

Induced

name: MaterialEntity
title: Material Entity
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- Material
- Physical entity
is_a: NamedThing
abstract: true
attributes:
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    notes:
    - 'abstracted pattern: prefix:typecode-authshoulder-blade(.version)?(_seqsuffix)?'
    - a minimum length of 3 characters is suggested for typecodes, but 1 or 2 characters
      will be accepted
    - typecodes must correspond 1:1 to a class in the NMDC schema. this will be checked
      via per-class id slot usage assertions
    - minting authority shoulders should probably be enumerated and checked in the
      pattern
    examples:
    - value: nmdc:mgmag-00-x012.1_7_c1
      description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    identifier: true
    alias: id
    owner: MaterialEntity
    domain_of:
    - Biosample
    - Study
    - NamedThing
    - Activity
    range: uriorcurie
    required: true
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: name
    owner: MaterialEntity
    domain_of:
    - Protocol
    - NamedThing
    - PersonValue
    - Activity
    range: string
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: MaterialEntity
    domain_of:
    - Study
    - NamedThing
    - ImageValue
    range: string
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    multivalued: true
    alias: alternative_identifiers
    owner: MaterialEntity
    domain_of:
    - Biosample
    - Study
    - NamedThing
    - MetaboliteQuantification
    range: uriorcurie
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$